Literature DB >> 2800044

The spectral signal-to-noise ratio resolution criterion: computational efficiency and statistical precision.

M Unser1, B L Trus, J Frank, A C Steven.   

Abstract

This note describes a practical improvement in the computational efficiency of the spectral signal-to-noise ratio (SSNR) resolution criterion for correlation-averaged images. The total set of N images is randomly partitioned into ng subsets, each subset is separately averaged, and a reduced form of the SSNR is computed from these average images. In general, larger values of ng achieve lower statistical uncertainty, while smaller values of ng are computationally more expedient. It is shown that, for negatively stained data, a judicious compromise is achieved with 10 less than or equal to ng less than or equal to 20, regardless of how large N may be.

Mesh:

Year:  1989        PMID: 2800044     DOI: 10.1016/0304-3991(89)90074-0

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  9 in total

1.  Tapping-mode atomic force microscopy produces faithful high-resolution images of protein surfaces.

Authors:  C Möller; M Allen; V Elings; A Engel; D J Müller
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

2.  Variable LH2 stoichiometry and core clustering in native membranes of Rhodospirillum photometricum.

Authors:  Simon Scheuring; Jean-Louis Rigaud; James N Sturgis
Journal:  EMBO J       Date:  2004-09-30       Impact factor: 11.598

3.  Structural studies of human alpha 2-macroglobulin: concordance between projected views obtained by negative-stain and cryoelectron microscopy.

Authors:  J K Stoops; J P Schroeter; J P Bretaudiere; N H Olson; T S Baker; D K Strickland
Journal:  J Struct Biol       Date:  1991-04       Impact factor: 2.867

4.  Structural information, resolution, and noise in high-resolution atomic force microscopy topographs.

Authors:  Peter Fechner; Thomas Boudier; Stéphanie Mangenot; Szymon Jaroslawski; James N Sturgis; Simon Scheuring
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

5.  The random-model method enables ab initio 3D reconstruction of asymmetric particles and determination of particle symmetry.

Authors:  Eduardo Sanz-García; Aaron B Stewart; David M Belnap
Journal:  J Struct Biol       Date:  2010-03-28       Impact factor: 2.867

6.  High-resolution low-dose scanning transmission electron microscopy.

Authors:  James P Buban; Quentin Ramasse; Bryant Gipson; Nigel D Browning; Henning Stahlberg
Journal:  J Electron Microsc (Tokyo)       Date:  2009-11-14

7.  The bacteriophage phi29 head-tail connector imaged at high resolution with the atomic force microscope in buffer solution.

Authors:  D J Müller; A Engel; J L Carrascosa; M Vélez
Journal:  EMBO J       Date:  1997-05-15       Impact factor: 11.598

Review 8.  Filming biomolecular processes by high-speed atomic force microscopy.

Authors:  Toshio Ando; Takayuki Uchihashi; Simon Scheuring
Journal:  Chem Rev       Date:  2014-01-30       Impact factor: 60.622

Review 9.  Definition and estimation of resolution in single-particle reconstructions.

Authors:  Hstau Y Liao; Joachim Frank
Journal:  Structure       Date:  2010-07-14       Impact factor: 5.006

  9 in total

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