Literature DB >> 20353825

The random-model method enables ab initio 3D reconstruction of asymmetric particles and determination of particle symmetry.

Eduardo Sanz-García1, Aaron B Stewart, David M Belnap.   

Abstract

Model-based, 3D reconstruction techniques depend on reliable starting models. We present an extension of the random-model method (RMM) that allows the ab initio generation of suitable starting models directly from un-averaged, experimental images of asymmetric or symmetric particles. Therefore, the asymmetric RMM can also be used to determine point-group symmetry. The procedure is facilitated by the use of (a) variable angular step-sizes during iterative origin and orientation searches, (b) high numbers of particle images, and (c) highly defocused images. The method is inhibited by mixed-handedness orientation assignments and by particles with inconspicuous features. For symmetric particles, symmetric RMMs can overcome these deficiencies. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20353825      PMCID: PMC2885456          DOI: 10.1016/j.jsb.2010.03.017

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  34 in total

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Review 10.  Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the future.

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  12 in total

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7.  Gorgon and pathwalking: macromolecular modeling tools for subnanometer resolution density maps.

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8.  Conformational shift of a major poliovirus antigen confirmed by immuno-cryogenic electron microscopy.

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