Literature DB >> 27998091

Tryptophan Lyase (NosL): A Cornucopia of 5'-Deoxyadenosyl Radical Mediated Transformations.

Dhananjay M Bhandari1, Dmytro Fedoseyenko1, Tadhg P Begley1.   

Abstract

Tryptophan lyase (NosL) is a radical S-adenosyl-l-methionine (SAM) enzyme that catalyzes the formation of 3-methyl-2-indolic acid from l-tryptophan. In this paper, we demonstrate that the 5'-deoxyadenosyl radical is considerably more versatile in its chemistry than previously anticipated: hydrogen atom abstraction from Nα-cyclopropyltryptophan occurs at Cα rather than the amino group with NosL Y90A and replacing the substrate amine with a ketone or an alkene changes the chemistry from hydrogen atom abstraction to double bond addition. In addition, the 5'-deoxyadenosyl radical can add to the [4Fe-4S] cluster and dithionite can be used to trap radicals at the active site.

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Year:  2016        PMID: 27998091     DOI: 10.1021/jacs.6b06139

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

1.  Mechanistic elucidation of the mycofactocin-biosynthetic radical S-adenosylmethionine protein, MftC.

Authors:  Bulat Khaliullin; Richard Ayikpoe; Mason Tuttle; John A Latham
Journal:  J Biol Chem       Date:  2017-06-20       Impact factor: 5.157

2.  Mechanistic Studies on Tryptophan Lyase (NosL): Identification of Cyanide as a Reaction Product.

Authors:  Dhananjay M Bhandari; Dmytro Fedoseyenko; Tadhg P Begley
Journal:  J Am Chem Soc       Date:  2018-01-02       Impact factor: 15.419

3.  Substrate-Dependent Cleavage Site Selection by Unconventional Radical S-Adenosylmethionine Enzymes in Diphthamide Biosynthesis.

Authors:  Min Dong; Masaki Horitani; Boris Dzikovski; Jack H Freed; Steven E Ealick; Brian M Hoffman; Hening Lin
Journal:  J Am Chem Soc       Date:  2017-04-13       Impact factor: 15.419

4.  Mechanism of Radical S-Adenosyl-l-methionine Adenosylation: Radical Intermediates and the Catalytic Competence of the 5'-Deoxyadenosyl Radical.

Authors:  Maike N Lundahl; Raymond Sarksian; Hao Yang; Richard J Jodts; Adrien Pagnier; Donald F Smith; Martín A Mosquera; Wilfred A van der Donk; Brian M Hoffman; William E Broderick; Joan B Broderick
Journal:  J Am Chem Soc       Date:  2022-03-08       Impact factor: 16.383

Review 5.  Radical S-Adenosylmethionine Enzymes Involved in RiPP Biosynthesis.

Authors:  Nilkamal Mahanta; Graham A Hudson; Douglas A Mitchell
Journal:  Biochemistry       Date:  2017-09-22       Impact factor: 3.162

6.  New Insight into the Mechanism of Anaerobic Heme Degradation.

Authors:  Liju G Mathew; Nathaniel R Beattie; Clayton Pritchett; William N Lanzilotta
Journal:  Biochemistry       Date:  2019-11-07       Impact factor: 3.162

Review 7.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

Review 8.  Genomic Enzymology: Web Tools for Leveraging Protein Family Sequence-Function Space and Genome Context to Discover Novel Functions.

Authors:  John A Gerlt
Journal:  Biochemistry       Date:  2017-08-22       Impact factor: 3.162

9.  Biosynthesis of the nosiheptide indole side ring centers on a cryptic carrier protein NosJ.

Authors:  Wei Ding; Wenjuan Ji; Yujie Wu; Runze Wu; Wan-Qiu Liu; Tianlu Mo; Junfeng Zhao; Xiaoyan Ma; Wei Zhang; Ping Xu; Zixin Deng; Boping Tang; Yi Yu; Qi Zhang
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

10.  Biosynthesis of the sactipeptide Ruminococcin C by the human microbiome: Mechanistic insights into thioether bond formation by radical SAM enzymes.

Authors:  Clémence Balty; Alain Guillot; Laura Fradale; Clémence Brewee; Benjamin Lefranc; Christian Herrero; Corine Sandström; Jérôme Leprince; Olivier Berteau; Alhosna Benjdia
Journal:  J Biol Chem       Date:  2020-09-24       Impact factor: 5.157

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