Literature DB >> 279907

Primary organization of nucleosome core particle of chromatin: sequence of histone arrangement along DNA.

A D Mirzabekov, V V Shick, A V Belyavsky, S G Bavykin.   

Abstract

A high-resolution map for the arrangement of histones along DNA in the nucleosome core particle has been determined by a sequencing procedure based on crosslinking histones to the 5'-terminal DNA fragments produced by scission of one DNA strand at the point of crosslinking. The position of histones on DNA has been identified by measuring the length of crosslinked DNA fragments. The results demonstrate that each of the histones is arranged within several adjacent or dispersed DNA segments of a little less than 10 nucleotides in length. Histone-free intervals are located between these segments at the regular distances of about (10)n nucleotides from the 5' end of the DNA and are likely to face one side of the DNA helix. Histones appear to be arranged in a similar manner on both DNA strands and do not form "locks" around DNA. A linearized model of the core particle is proposed.

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Year:  1978        PMID: 279907      PMCID: PMC336076          DOI: 10.1073/pnas.75.9.4184

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Crosslinked histone octamer as a model of the nucleosome core.

Authors:  A Stein; M Bina-Stein; R T Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-07       Impact factor: 11.205

2.  Mapping DNAase l-susceptible sites in nucleosomes labeled at the 5' ends.

Authors:  R T Simpson; J P Whitlock
Journal:  Cell       Date:  1976-10       Impact factor: 41.582

3.  Nucleosome structure II: structure of the SV40 minichromosome and electron microscopic evidence for reversible transitions of the nucleosome structure.

Authors:  P Oudet; C Spadafora; P Chambon
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

4.  Structure of nucleosome core particles of chromatin.

Authors:  J T Finch; L C Lutter; D Rhodes; R S Brown; B Rushton; M Levitt; A Klug
Journal:  Nature       Date:  1977-09-01       Impact factor: 49.962

5.  The structure of nucleosomes: the arrangement of histones in the DNA grooves and along the DNA chain.

Authors:  A D Mirzabekov; V V Shick; A V Belyavsky; V L Karpov; S G Bavykin
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

Review 6.  Structure of chromatin.

Authors:  R D Kornberg
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

Review 7.  Chromatin.

Authors:  G Felsenfeld
Journal:  Nature       Date:  1978-01-12       Impact factor: 49.962

8.  Peptide mapping by limited proteolysis in sodium dodecyl sulfate and analysis by gel electrophoresis.

Authors:  D W Cleveland; S G Fischer; M W Kirschner; U K Laemmli
Journal:  J Biol Chem       Date:  1977-02-10       Impact factor: 5.157

9.  DNA folding in the nucleosome.

Authors:  M Noll
Journal:  J Mol Biol       Date:  1977-10-15       Impact factor: 5.469

10.  [Two simple methods for isolation of DNA from various sources using cetavlon].

Authors:  V I Naktinis; N E Maleeva; D F San'ko; A D Mirzabekov
Journal:  Biokhimiia       Date:  1977-10
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  24 in total

Review 1.  Evolutionary consequences of nonrandom damage and repair of chromatin domains.

Authors:  T Boulikas
Journal:  J Mol Evol       Date:  1992-08       Impact factor: 2.395

2.  Rapid DNA-protein cross-linking and strand scission by an abasic site in a nucleosome core particle.

Authors:  Jonathan T Sczepanski; Remus S Wong; Jeffrey N McKnight; Gregory D Bowman; Marc M Greenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

3.  The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix.

Authors:  G Arents; R W Burlingame; B C Wang; W E Love; E N Moudrianakis
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-15       Impact factor: 11.205

4.  Role of amino-terminal histone domains in chromatin replication.

Authors:  G Quintini; K Treuner; C Gruss; R Knippers
Journal:  Mol Cell Biol       Date:  1996-06       Impact factor: 4.272

5.  Rapid and reversible changes in nucleosome structure accompany the activation, repression, and superinduction of murine fibroblast protooncogenes c-fos and c-myc.

Authors:  T A Chen; V G Allfrey
Journal:  Proc Natl Acad Sci U S A       Date:  1987-08       Impact factor: 11.205

Review 6.  Acetylation of histones in nucleosomes.

Authors:  D Doenecke; D Gallwitz
Journal:  Mol Cell Biochem       Date:  1982-04-30       Impact factor: 3.396

7.  DNA-histone interactions in nucleosomes.

Authors:  K E Van Holde; J R Allen; K Tatchell; W O Weischet; D Lohr
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

8.  Primary organization of nucleosomal core particles is invariable in repressed and active nuclei from animal, plant and yeast cells.

Authors:  S G Bavykin; S I Usachenko; A I Lishanskaya; V V Shick; A V Belyavsky; I M Undritsov; A A Strokov; I A Zalenskaya; A D Mirzabekov
Journal:  Nucleic Acids Res       Date:  1985-05-24       Impact factor: 16.971

9.  Core nucleosomes by digestion of reconstructed histone-DNA complexes.

Authors:  P N Bryan; E B Wright; D E Olins
Journal:  Nucleic Acids Res       Date:  1979-04       Impact factor: 16.971

10.  Molecular structure of deoxycytidyl-3'-methylphosphonate (RP) 5'-deoxyguanidine, d[Cp(CH3)G]. A neutral dinucleotide with Watson-Crick base pairing and a right handed helical twist.

Authors:  F Han; W Watt; D J Duchamp; L Callahan; F J Kézdy; K Agarwal
Journal:  Nucleic Acids Res       Date:  1990-05-11       Impact factor: 16.971

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