Literature DB >> 27989805

Engineering a functional 1-deoxy-D-xylulose 5-phosphate (DXP) pathway in Saccharomyces cerevisiae.

James Kirby1, Kevin L Dietzel2, Gale Wichmann2, Rossana Chan1, Eugene Antipov2, Nathan Moss2, Edward E K Baidoo3, Peter Jackson2, Sara P Gaucher2, Shayin Gottlieb2, Jeremy LaBarge2, Tina Mahatdejkul2, Kristy M Hawkins2, Sheela Muley2, Jack D Newman2, Pinghua Liu4, Jay D Keasling5, Lishan Zhao6.   

Abstract

Isoprenoids are used in many commercial applications and much work has gone into engineering microbial hosts for their production. Isoprenoids are produced either from acetyl-CoA via the mevalonate pathway or from pyruvate and glyceraldehyde 3-phosphate via the 1-deoxy-D-xylulose 5-phosphate (DXP) pathway. Saccharomyces cerevisiae exclusively utilizes the mevalonate pathway to synthesize native isoprenoids and in fact the alternative DXP pathway has never been found or successfully reconstructed in the eukaryotic cytosol. There are, however, several advantages to isoprenoid synthesis via the DXP pathway, such as a higher theoretical yield, and it has long been a goal to transplant the pathway into yeast. In this work, we investigate and address barriers to DXP pathway functionality in S. cerevisiae using a combination of synthetic biology, biochemistry and metabolomics. We report, for the first time, functional expression of the DXP pathway in S. cerevisiae. Under low aeration conditions, an engineered strain relying solely on the DXP pathway for isoprenoid biosynthesis achieved an endpoint biomass 80% of that of the same strain using the mevalonate pathway.
Copyright © 2016 International Metabolic Engineering Society. All rights reserved.

Entities:  

Keywords:  MEP pathway; metabolic engineering; terpene; yeast

Mesh:

Substances:

Year:  2016        PMID: 27989805      PMCID: PMC5718835          DOI: 10.1016/j.ymben.2016.10.017

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  46 in total

1.  Functional characterization of GcpE, an essential enzyme of the non-mevalonate pathway of isoprenoid biosynthesis.

Authors:  Ann-Kristin Kollas; Evert C Duin; Matthias Eberl; Boran Altincicek; Martin Hintz; Armin Reichenberg; Dajana Henschker; Anke Henne; Irina Steinbrecher; Dmitry N Ostrovsky; Reiner Hedderich; Ewald Beck; Hassan Jomaa; Jochen Wiesner
Journal:  FEBS Lett       Date:  2002-12-18       Impact factor: 4.124

Review 2.  Methylerythritol phosphate pathway of isoprenoid biosynthesis.

Authors:  Lishan Zhao; Wei-chen Chang; Youli Xiao; Hung-wen Liu; Pinghua Liu
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

3.  Isoprenoid biosynthesis: the evolution of two ancient and distinct pathways across genomes.

Authors:  B M Lange; T Rujan; W Martin; R Croteau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-21       Impact factor: 11.205

4.  Reconstruction of a bacterial isoprenoid biosynthetic pathway in Saccharomyces cerevisiae.

Authors:  Jérôme Maury; Mohammad A Asadollahi; Kasper Møller; Michel Schalk; Anthony Clark; Luca R Formenti; Jens Nielsen
Journal:  FEBS Lett       Date:  2008-11-06       Impact factor: 4.124

5.  Isoprenoid biosynthesis in plant chloroplasts via the MEP pathway: direct thylakoid/ferredoxin-dependent photoreduction of GcpE/IspG.

Authors:  Myriam Seemann; Bernadette Tse Sum Bui; Murielle Wolff; Myroslawa Miginiac-Maslow; Michel Rohmer
Journal:  FEBS Lett       Date:  2006-02-02       Impact factor: 4.124

Review 6.  Maturation of iron-sulfur proteins in eukaryotes: mechanisms, connected processes, and diseases.

Authors:  Roland Lill; Ulrich Mühlenhoff
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

7.  Heterologous expression and characterization of bacterial 2-C-methyl-D-erythritol-4-phosphate pathway in Saccharomyces cerevisiae.

Authors:  Simon Carlsen; Parayil Kumaran Ajikumar; Luca Riccardo Formenti; Kang Zhou; Too Heng Phon; Michael Lynge Nielsen; Anna Eliasson Lantz; Morten C Kielland-Brandt; Gregory Stephanopoulos
Journal:  Appl Microbiol Biotechnol       Date:  2013-05-01       Impact factor: 4.813

8.  In silico profiling of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories.

Authors:  Evamaria Gruchattka; Oliver Hädicke; Steffen Klamt; Verena Schütz; Oliver Kayser
Journal:  Microb Cell Fact       Date:  2013-09-23       Impact factor: 5.328

9.  Metabolite profiling identified methylerythritol cyclodiphosphate efflux as a limiting step in microbial isoprenoid production.

Authors:  Kang Zhou; Ruiyang Zou; Gregory Stephanopoulos; Heng-Phon Too
Journal:  PLoS One       Date:  2012-11-02       Impact factor: 3.240

10.  Reconstruction and evaluation of the synthetic bacterial MEP pathway in Saccharomyces cerevisiae.

Authors:  Siavash Partow; Verena Siewers; Laurent Daviet; Michel Schalk; Jens Nielsen
Journal:  PLoS One       Date:  2012-12-28       Impact factor: 3.240

View more
  10 in total

1.  Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host.

Authors:  Francesca D'Angelo; Elena Fernández-Fueyo; Pierre Simon Garcia; Helena Shomar; Frédéric Barras; Gregory Bokinsky; Martin Pelosse; Rita Rebelo Manuel; Ferhat Büke; Siyi Liu; Niels van den Broek; Nicolas Duraffourg; Carol de Ram; Martin Pabst; Emmanuelle Bouveret; Simonetta Gribaldo; Béatrice Py; Sandrine Ollagnier de Choudens
Journal:  Elife       Date:  2022-03-04       Impact factor: 8.140

2.  Exploring D-xylose oxidation in Saccharomyces cerevisiae through the Weimberg pathway.

Authors:  Lisa Wasserstrom; Diogo Portugal-Nunes; Henrik Almqvist; Anders G Sandström; Gunnar Lidén; Marie F Gorwa-Grauslund
Journal:  AMB Express       Date:  2018-03-05       Impact factor: 3.298

3.  Breeding and Engineering Trees to Accumulate High Levels of Terpene Metabolites for Plant Defense and Renewable Chemicals.

Authors:  Gary F Peter
Journal:  Front Plant Sci       Date:  2018-11-20       Impact factor: 5.753

Review 4.  Towards a Synthetic Biology Toolset for Metallocluster Enzymes in Biosynthetic Pathways: What We Know and What We Need.

Authors:  Helena Shomar; Gregory Bokinsky
Journal:  Molecules       Date:  2021-11-17       Impact factor: 4.411

Review 5.  Diversifying Isoprenoid Platforms via Atypical Carbon Substrates and Non-model Microorganisms.

Authors:  David N Carruthers; Taek Soon Lee
Journal:  Front Microbiol       Date:  2021-12-02       Impact factor: 5.640

6.  Microbial Platform for Terpenoid Production: Escherichia coli and Yeast.

Authors:  Chonglong Wang; Mudanguli Liwei; Ji-Bin Park; Seong-Hee Jeong; Gongyuan Wei; Yujun Wang; Seon-Won Kim
Journal:  Front Microbiol       Date:  2018-10-12       Impact factor: 5.640

7.  Functional replacement of isoprenoid pathways in Rhodobacter sphaeroides.

Authors:  Enrico Orsi; Jules Beekwilder; Dewi van Gelder; Adèle van Houwelingen; Gerrit Eggink; Servé W M Kengen; Ruud A Weusthuis
Journal:  Microb Biotechnol       Date:  2020-03-24       Impact factor: 5.813

Review 8.  Advanced Strategies for Production of Natural Products in Yeast.

Authors:  Ruibing Chen; Shan Yang; Lei Zhang; Yongjin J Zhou
Journal:  iScience       Date:  2020-02-01

Review 9.  Modular engineering for microbial production of carotenoids.

Authors:  Cheng Li; Charles A Swofford; Anthony J Sinskey
Journal:  Metab Eng Commun       Date:  2019-12-15

Review 10.  Alternative metabolic pathways and strategies to high-titre terpenoid production in Escherichia coli.

Authors:  Mauro A Rinaldi; Clara A Ferraz; Nigel S Scrutton
Journal:  Nat Prod Rep       Date:  2022-01-26       Impact factor: 13.423

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.