Literature DB >> 27984724

Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis.

Yen-Sin Ang1, Renee N Rivas1, Alexandre J S Ribeiro2, Rohith Srivas3, Janell Rivera4, Nicole R Stone1, Karishma Pratt4, Tamer M A Mohamed1, Ji-Dong Fu4, C Ian Spencer4, Nathaniel D Tippens5, Molong Li4, Anil Narasimha3, Ethan Radzinsky4, Anita J Moon-Grady6, Haiyuan Yu5, Beth L Pruitt2, Michael P Snyder3, Deepak Srivastava7.   

Abstract

Mutation of highly conserved residues in transcription factors may affect protein-protein or protein-DNA interactions, leading to gene network dysregulation and human disease. Human mutations in GATA4, a cardiogenic transcription factor, cause cardiac septal defects and cardiomyopathy. Here, iPS-derived cardiomyocytes from subjects with a heterozygous GATA4-G296S missense mutation showed impaired contractility, calcium handling, and metabolic activity. In human cardiomyocytes, GATA4 broadly co-occupied cardiac enhancers with TBX5, another transcription factor that causes septal defects when mutated. The GATA4-G296S mutation disrupted TBX5 recruitment, particularly to cardiac super-enhancers, concomitant with dysregulation of genes related to the phenotypic abnormalities, including cardiac septation. Conversely, the GATA4-G296S mutation led to failure of GATA4 and TBX5-mediated repression at non-cardiac genes and enhanced open chromatin states at endothelial/endocardial promoters. These results reveal how disease-causing missense mutations can disrupt transcriptional cooperativity, leading to aberrant chromatin states and cellular dysfunction, including those related to morphogenetic defects.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  GATA4; TBX5; birth defect; cardiomyopathy; congenital heart defects; disease modeling; epigenetics; gene regulation; heart development; systems biology

Mesh:

Substances:

Year:  2016        PMID: 27984724      PMCID: PMC5180611          DOI: 10.1016/j.cell.2016.11.033

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  48 in total

1.  sonic hedgehog is required in pulmonary endoderm for atrial septation.

Authors:  Andrew D Hoffmann; Michael A Peterson; Joshua M Friedland-Little; Stuart A Anderson; Ivan P Moskowitz
Journal:  Development       Date:  2009-04-15       Impact factor: 6.868

2.  A more efficient method to generate integration-free human iPS cells.

Authors:  Keisuke Okita; Yasuko Matsumura; Yoshiko Sato; Aki Okada; Asuka Morizane; Satoshi Okamoto; Hyenjong Hong; Masato Nakagawa; Koji Tanabe; Ken-ichi Tezuka; Toshiyuki Shibata; Takahiro Kunisada; Masayo Takahashi; Jun Takahashi; Hiroh Saji; Shinya Yamanaka
Journal:  Nat Methods       Date:  2011-04-03       Impact factor: 28.547

3.  GATA4 transcription factor is required for ventral morphogenesis and heart tube formation.

Authors:  C T Kuo; E E Morrisey; R Anandappa; K Sigrist; M M Lu; M S Parmacek; C Soudais; J M Leiden
Journal:  Genes Dev       Date:  1997-04-15       Impact factor: 11.361

4.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

5.  Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.

Authors:  Yen-Sin Ang; Su-Yi Tsai; Dung-Fang Lee; Jonathan Monk; Jie Su; Kajan Ratnakumar; Junjun Ding; Yongchao Ge; Henia Darr; Betty Chang; Jianlong Wang; Michael Rendl; Emily Bernstein; Christoph Schaniel; Ihor R Lemischka
Journal:  Cell       Date:  2011-04-07       Impact factor: 41.582

6.  Hairy-related transcription factors inhibit GATA-dependent cardiac gene expression through a signal-responsive mechanism.

Authors:  Irfan S Kathiriya; Isabelle N King; Masao Murakami; Masayo Nakagawa; John M Astle; Kelly A Gardner; Robert D Gerard; Eric N Olson; Deepak Srivastava; Osamu Nakagawa
Journal:  J Biol Chem       Date:  2004-10-12       Impact factor: 5.157

7.  Interaction of Gata4 and Gata6 with Tbx5 is critical for normal cardiac development.

Authors:  Meenakshi Maitra; Marie K Schluterman; Haley A Nichols; James A Richardson; Cecilia W Lo; Deepak Srivastava; Vidu Garg
Journal:  Dev Biol       Date:  2008-11-20       Impact factor: 3.582

8.  Scl represses cardiomyogenesis in prospective hemogenic endothelium and endocardium.

Authors:  Ben Van Handel; Amélie Montel-Hagen; Rajkumar Sasidharan; Haruko Nakano; Roberto Ferrari; Cornelis J Boogerd; Johann Schredelseker; Yanling Wang; Sean Hunter; Tõnis Org; Jian Zhou; Xinmin Li; Matteo Pellegrini; Jau-Nian Chen; Stuart H Orkin; Siavash K Kurdistani; Sylvia M Evans; Atsushi Nakano; Hanna K A Mikkola
Journal:  Cell       Date:  2012-08-03       Impact factor: 41.582

9.  Congenital heart disease-causing Gata4 mutation displays functional deficits in vivo.

Authors:  Chaitali Misra; Nita Sachan; Caryn Rothrock McNally; Sara N Koenig; Haley A Nichols; Anuradha Guggilam; Pamela A Lucchesi; William T Pu; Deepak Srivastava; Vidu Garg
Journal:  PLoS Genet       Date:  2012-05-10       Impact factor: 5.917

10.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.

Authors:  Daehwan Kim; Geo Pertea; Cole Trapnell; Harold Pimentel; Ryan Kelley; Steven L Salzberg
Journal:  Genome Biol       Date:  2013-04-25       Impact factor: 13.583

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  90 in total

1.  Loss of function, missense, and intronic variants in NOTCH1 confer different risks for left ventricular outflow tract obstructive heart defects in two European cohorts.

Authors:  Emmi Helle; Aldo Córdova-Palomera; Tiina Ojala; Priyanka Saha; Praneetha Potiny; Stefan Gustafsson; Erik Ingelsson; Michael Bamshad; Deborah Nickerson; Jessica X Chong; Euan Ashley; James R Priest
Journal:  Genet Epidemiol       Date:  2018-12-04       Impact factor: 2.135

Review 2.  Multi-Imaging Method to Assay the Contractile Mechanical Output of Micropatterned Human iPSC-Derived Cardiac Myocytes.

Authors:  Alexandre J S Ribeiro; Olivier Schwab; Mohammad A Mandegar; Yen-Sin Ang; Bruce R Conklin; Deepak Srivastava; Beth L Pruitt
Journal:  Circ Res       Date:  2017-04-11       Impact factor: 17.367

Review 3.  Taking Systems Medicine to Heart.

Authors:  Kalliopi Trachana; Rhishikesh Bargaje; Gustavo Glusman; Nathan D Price; Sui Huang; Leroy E Hood
Journal:  Circ Res       Date:  2018-04-27       Impact factor: 17.367

4.  Genome Editing in hPSCs Reveals GATA6 Haploinsufficiency and a Genetic Interaction with GATA4 in Human Pancreatic Development.

Authors:  Zhong-Dong Shi; Kihyun Lee; Dapeng Yang; Sadaf Amin; Nipun Verma; Qing V Li; Zengrong Zhu; Chew-Li Soh; Ritu Kumar; Todd Evans; Shuibing Chen; Danwei Huangfu
Journal:  Cell Stem Cell       Date:  2017-02-09       Impact factor: 24.633

Review 5.  Genetic Basis for Congenital Heart Disease: Revisited: A Scientific Statement From the American Heart Association.

Authors:  Mary Ella Pierpont; Martina Brueckner; Wendy K Chung; Vidu Garg; Ronald V Lacro; Amy L McGuire; Seema Mital; James R Priest; William T Pu; Amy Roberts; Stephanie M Ware; Bruce D Gelb; Mark W Russell
Journal:  Circulation       Date:  2018-11-20       Impact factor: 29.690

6.  Congenital heart disease in a dish: progress toward understanding patient-specific mutations.

Authors:  Emily J Mercer; Todd Evans
Journal:  J Thorac Dis       Date:  2017-05       Impact factor: 2.895

7.  A temporal transcriptome and methylome in human embryonic stem cell-derived cardiomyocytes identifies novel regulators of early cardiac development.

Authors:  Kai Fu; Haruko Nakano; Marco Morselli; Tiffany Chen; Herman Pappoe; Atsuschi Nakano; Matteo Pellegrini
Journal:  Epigenetics       Date:  2018-10-19       Impact factor: 4.528

Review 8.  Genetic and epigenetic regulation of cardiomyocytes in development, regeneration and disease.

Authors:  Miao Cui; Zhaoning Wang; Rhonda Bassel-Duby; Eric N Olson
Journal:  Development       Date:  2018-12-20       Impact factor: 6.868

9.  Nestin expression is dynamically regulated in cardiomyocytes during embryogenesis.

Authors:  Vanessa Hertig; Adrianna Matos-Nieves; Vidu Garg; Louis Villeneuve; Maya Mamarbachi; Laurie Caland; Angelino Calderone
Journal:  J Cell Physiol       Date:  2017-09-27       Impact factor: 6.384

Review 10.  Morphomechanic phenotypic variability of sarcomeric cardiomyopathies: A multifactorial polygenic perspective.

Authors:  Ares Pasipoularides
Journal:  J Mol Cell Cardiol       Date:  2018-11-10       Impact factor: 5.000

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