Literature DB >> 27983729

Genetic screening in Iranian patients with retinoblastoma.

K Shahraki1, A Ahani2, P Sharma3, M Faranoush4, G Bahoush5, I Torktaz6, W A Gahl3, M Naseripour1, B Behnam3,7.   

Abstract

PurposeThe most common intraocular tumor in childhood, retinoblastoma, is largely associated with mutations in the RB1 gene. In the most comprehensive RB1 screening in Iran, we evaluated the RB1 mutations in 106 patients with retinoblastoma, including 73 bilateral (heritable) and 33 unilateral (sporadic) cases.Patients and methodsMutations were identified using amplification refractory mutation system (ARMS) PCR and direct sequencing of the 27 coding exons of RB1 and multiplex ligation-dependent probe amplification (MLPA).Results and ConclusionWe found 33 (31%) and 64 (60%) patients with sporadic unilateral and bilateral retinoblastoma, respectively as well as 9 (8.5%) cases with hereditary bilateral retinoblastoma. In total, we identified 52 causative RB1 mutations in 106 patients (global mutation rate of 49%). Of the 52 patients, 48 (92%) had sporadic and familial bilateral and 4 (8%) had sporadic unilateral RB. Therefore, the detection rate of RB1 mutations was 66% (48/73) and 12% (4/33) in bilateral and unilateral cases, respectively. Mutations were classified as nonsense in 31 (60%), missense in 1 (2%), large deletion in 11 (21%), small deletion in the 7 novel (15%) and splice site mutation in 2 (4%) patients with RB. Of 31 nonsense mutations, 23 (74%) occurred in the 11 Arginine codons of the RB1. Seven mutations (13%) were novel, and 45 (87%) had been previously reported. Thirty-three mutations were single-base substitutions leading to 31 nonsense amino acid changes and 2 splice site mutations in introns 12 and 16 of RB1. The altered 3D model structures of the RB1 novel mutant proteins are also predicted in this study.

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Year:  2016        PMID: 27983729      PMCID: PMC5396007          DOI: 10.1038/eye.2016.289

Source DB:  PubMed          Journal:  Eye (Lond)        ISSN: 0950-222X            Impact factor:   3.775


  35 in total

1.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

2.  Mutation spectrum of the retinoblastoma gene in osteosarcomas.

Authors:  B Wadayama; J Toguchida; T Shimizu; K Ishizaki; M S Sasaki; Y Kotoura; T Yamamuro
Journal:  Cancer Res       Date:  1994-06-01       Impact factor: 12.701

3.  Overview of RB gene mutations in patients with retinoblastoma. Implications for clinical genetic screening.

Authors:  J W Harbour
Journal:  Ophthalmology       Date:  1998-08       Impact factor: 12.079

4.  Detection of mosaic RB1 mutations in families with retinoblastoma.

Authors:  Diane Rushlow; Beata Piovesan; Katherine Zhang; Nadia L Prigoda-Lee; Mellone N Marchong; Robin D Clark; Brenda L Gallie
Journal:  Hum Mutat       Date:  2009-05       Impact factor: 4.878

5.  A comprehensive, sensitive and economical approach for the detection of mutations in the RB1 gene in retinoblastoma.

Authors:  Vidya Latha Parsam; Chitra Kannabiran; Santosh Honavar; Geeta K Vemuganti; Mohammad Javed Ali
Journal:  J Genet       Date:  2009-12       Impact factor: 1.166

Review 6.  Retinoblastoma: review of current management.

Authors:  Murali Chintagumpala; Patricia Chevez-Barrios; Evelyn A Paysse; Sharon E Plon; Richard Hurwitz
Journal:  Oncologist       Date:  2007-10

7.  A general theory of carcinogenesis.

Authors:  D E Comings
Journal:  Proc Natl Acad Sci U S A       Date:  1973-12       Impact factor: 11.205

8.  Mutation and cancer: statistical study of retinoblastoma.

Authors:  A G Knudson
Journal:  Proc Natl Acad Sci U S A       Date:  1971-04       Impact factor: 11.205

9.  Mutational screening of the RB1 gene in Italian patients with retinoblastoma reveals 11 novel mutations.

Authors:  Katia Sampieri; Theodora Hadjistilianou; Francesca Mari; Caterina Speciale; Maria Antonietta Mencarelli; Francesco Cetta; Siranoush Manoukian; Bernard Peissel; Daniela Giachino; Barbara Pasini; Antonio Acquaviva; Aldo Caporossi; Renato Frezzotti; Alessandra Renieri; Mirella Bruttini
Journal:  J Hum Genet       Date:  2006-02-04       Impact factor: 3.172

10.  SAM-T08, HMM-based protein structure prediction.

Authors:  Kevin Karplus
Journal:  Nucleic Acids Res       Date:  2009-05-29       Impact factor: 16.971

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