| Literature DB >> 27980841 |
Nurcan Akduran1, Mustafa Sertçelik2, Ömer Aydoğdu3, Hacali Necefoğlu4, Tuncer Hökelek5.
Abstract
The mononuclear title cadmium complex, [Cd(C10H14N2O)2(C8H4NO2)2(H2O)2], is centrosymmetric and contains two water mol-ecules, two 4-cyanobenzoate (CB) ligands and two di-ethyl-nicotinamide (DENA) ligands. All the ligands are coordinated to the CdII atom in a monodentate mode. The four nearest O atoms around the CdII atom form a slightly distorted square-planar arrangement, with the distorted octa-hedral coordination sphere being completed by the two pyridine N atoms of the DENA ligands at distances of 2.3336 (13) Å. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 8.75 (16)°, while the benzene and pyridine rings are oriented at a dihedral angle of 57.83 (5)°. The water mol-ecules exhibit both intra-molecular [to the non-coordinating carboxyl-ate O atom, enclosing an S(6) hydrogen-bonding motif, where O⋯O = 2.670 (2) Å] and inter-molecular [to the amide carbonyl O atom, enclosing an R22(16) ring motif, where O⋯O = 2.781 (2) Å] O-H⋯O hydrogen bonds. The latter lead to the formation of supra-molecular chains propagating along [110].Entities:
Keywords: cadmium; crystal structure; transition metal complexes of benzoic acid and nicotinamide derivatives
Year: 2016 PMID: 27980841 PMCID: PMC5137619 DOI: 10.1107/S2056989016018247
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title complex with the atom-numbering scheme for the asymmetric unit. Unlabelled atoms are generated by symmetry operation (−x, −y, −z). Displacement ellipsoids are drawn at the 50% probability level. Intramolecular O—H⋯O (w = water, c = non-coordinating carboxylate O atom) hydrogen bonds, enclosing S(6) hydrogen-bonding motifs, are shown as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O4—H41⋯O3i | 0.78 (3) | 2.01 (3) | 2.781 (2) | 169 (3) |
| O4—H42⋯O1ii | 0.87 (3) | 1.84 (3) | 2.670 (2) | 159 (3) |
Symmetry codes: (i) ; (ii) .
Figure 2Part of the supramolecular chain of the title compound. Intermolecular O—H ⋯ ODENA (ODENA = carbonyl O atom of N,N′-diethylnicotinamide) hydrogen bonds, enclosing (16) ring motifs, are shown as dashed lines. Non-bonding H atoms have been omitted for clarity.
Figure 3Part of the crystal structure. Intra- and intermolecular [O–H ⋯ O and O—H ⋯ ODENA, respectively] hydrogen bonds are shown as dashed lines (see Table 1 ▸). Non-bonding H atoms have been omitted for clarity.
Experimental details
| Crystal data | |
| Chemical formula | [Cd(C10H14N2O)2(C8H4NO2)2(H2O)2] |
|
| 797.16 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 296 |
|
| 7.5125 (2), 8.6671 (3), 15.3079 (5) |
| α, β, γ (°) | 86.198 (3), 76.249 (4), 74.730 (3) |
|
| 933.97 (5) |
|
| 1 |
| Radiation type | Mo |
| μ (mm−1) | 0.64 |
| Crystal size (mm) | 0.15 × 0.11 × 0.10 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.595, 0.746 |
| No. of measured, independent and observed [ | 46611, 4638, 4538 |
|
| 0.044 |
| (sin θ/λ)max (Å−1) | 0.669 |
| Refinement | |
|
| 0.027, 0.068, 1.09 |
| No. of reflections | 4638 |
| No. of parameters | 243 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.42, −1.02 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| [Cd(C10H14N2O)2(C8H4NO2)2(H2O)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 9549 reflections | |
| θ = 3.3–28.4° | |
| µ = 0.64 mm−1 | |
| α = 86.198 (3)° | |
| β = 76.249 (4)° | Block, colourless |
| γ = 74.730 (3)° | 0.15 × 0.11 × 0.10 mm |
| Bruker APEXII CCD diffractometer | 4638 independent reflections |
| Radiation source: fine-focus sealed tube | 4538 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.4°, θmin = 3.3° |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | |
| 46611 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 4638 reflections | Δρmax = 0.42 e Å−3 |
| 243 parameters | Δρmin = −1.02 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.063 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cd1 | 0.0000 | 0.0000 | 0.0000 | 0.03023 (7) | |
| O1 | 0.1214 (2) | 0.0630 (2) | −0.22948 (11) | 0.0618 (4) | |
| O2 | 0.25363 (17) | 0.01600 (17) | −0.11090 (8) | 0.0414 (3) | |
| O3 | −0.5079 (2) | 0.6289 (2) | 0.12687 (10) | 0.0600 (4) | |
| O4 | 0.1904 (2) | −0.1246 (2) | 0.09660 (10) | 0.0536 (4) | |
| H41 | 0.281 (4) | −0.194 (3) | 0.0977 (17) | 0.054 (7)* | |
| H42 | 0.106 (4) | −0.123 (3) | 0.147 (2) | 0.064 (8)* | |
| N1 | −0.01528 (19) | 0.24366 (16) | 0.06156 (9) | 0.0312 (3) | |
| N2 | −0.4728 (2) | 0.58766 (18) | 0.27019 (10) | 0.0400 (3) | |
| N3 | 1.1521 (3) | −0.2028 (3) | −0.46792 (15) | 0.0799 (7) | |
| C1 | 0.2592 (2) | 0.0188 (2) | −0.19381 (12) | 0.0349 (3) | |
| C2 | 0.4546 (2) | −0.03711 (19) | −0.25493 (11) | 0.0324 (3) | |
| C3 | 0.6144 (2) | −0.0663 (2) | −0.21992 (12) | 0.0388 (4) | |
| H3 | 0.6008 | −0.0560 | −0.1584 | 0.047* | |
| C4 | 0.7941 (3) | −0.1105 (2) | −0.27535 (13) | 0.0431 (4) | |
| H4 | 0.9008 | −0.1289 | −0.2515 | 0.052* | |
| C5 | 0.8134 (3) | −0.1272 (2) | −0.36706 (12) | 0.0412 (4) | |
| C6 | 0.6546 (3) | −0.1021 (3) | −0.40264 (13) | 0.0498 (5) | |
| H6 | 0.6684 | −0.1152 | −0.4639 | 0.060* | |
| C7 | 0.4760 (3) | −0.0575 (3) | −0.34684 (13) | 0.0449 (4) | |
| H7 | 0.3694 | −0.0409 | −0.3706 | 0.054* | |
| C8 | 1.0022 (3) | −0.1694 (3) | −0.42433 (14) | 0.0546 (5) | |
| C9 | −0.1852 (2) | 0.33349 (19) | 0.10302 (11) | 0.0317 (3) | |
| H9 | −0.2919 | 0.2972 | 0.1045 | 0.038* | |
| C10 | −0.2092 (2) | 0.47761 (19) | 0.14372 (11) | 0.0322 (3) | |
| C11 | −0.0502 (3) | 0.5326 (2) | 0.13986 (13) | 0.0410 (4) | |
| H11 | −0.0611 | 0.6289 | 0.1666 | 0.049* | |
| C12 | 0.1253 (3) | 0.4418 (2) | 0.09551 (13) | 0.0413 (4) | |
| H12 | 0.2339 | 0.4768 | 0.0916 | 0.050* | |
| C13 | 0.1368 (2) | 0.2986 (2) | 0.05715 (11) | 0.0347 (3) | |
| H13 | 0.2549 | 0.2382 | 0.0272 | 0.042* | |
| C14 | −0.4097 (2) | 0.57261 (19) | 0.18114 (11) | 0.0357 (3) | |
| C15 | −0.3659 (3) | 0.5045 (3) | 0.33602 (13) | 0.0504 (5) | |
| H15A | −0.2440 | 0.4405 | 0.3041 | 0.060* | |
| H15B | −0.4343 | 0.4325 | 0.3716 | 0.060* | |
| C16 | −0.3345 (4) | 0.6172 (4) | 0.39795 (18) | 0.0699 (7) | |
| H16A | −0.2536 | 0.5578 | 0.4353 | 0.105* | |
| H16B | −0.4540 | 0.6715 | 0.4351 | 0.105* | |
| H16C | −0.2757 | 0.6942 | 0.3630 | 0.105* | |
| C17 | −0.6711 (3) | 0.6737 (3) | 0.30629 (14) | 0.0497 (5) | |
| H17A | −0.7148 | 0.7492 | 0.2615 | 0.060* | |
| H17B | −0.6784 | 0.7340 | 0.3588 | 0.060* | |
| C18 | −0.7992 (4) | 0.5630 (5) | 0.3320 (3) | 0.0889 (9) | |
| H18A | −0.9278 | 0.6245 | 0.3520 | 0.133* | |
| H18B | −0.7624 | 0.4932 | 0.3796 | 0.133* | |
| H18C | −0.7892 | 0.5003 | 0.2808 | 0.133* |
| Cd1 | 0.02713 (10) | 0.02936 (10) | 0.03006 (10) | −0.00088 (6) | −0.00360 (6) | −0.00758 (6) |
| O1 | 0.0332 (7) | 0.0956 (13) | 0.0485 (8) | −0.0023 (7) | −0.0093 (6) | −0.0017 (8) |
| O2 | 0.0319 (6) | 0.0535 (7) | 0.0368 (6) | −0.0134 (5) | 0.0008 (5) | −0.0081 (5) |
| O3 | 0.0519 (8) | 0.0668 (10) | 0.0434 (7) | 0.0231 (7) | −0.0171 (6) | −0.0088 (7) |
| O4 | 0.0356 (7) | 0.0698 (10) | 0.0435 (8) | 0.0135 (7) | −0.0154 (6) | −0.0032 (7) |
| N1 | 0.0306 (6) | 0.0294 (6) | 0.0299 (6) | −0.0027 (5) | −0.0043 (5) | −0.0043 (5) |
| N2 | 0.0396 (8) | 0.0360 (7) | 0.0348 (7) | 0.0049 (6) | −0.0053 (6) | −0.0024 (6) |
| N3 | 0.0532 (12) | 0.0997 (18) | 0.0569 (12) | 0.0069 (12) | 0.0145 (10) | 0.0032 (12) |
| C1 | 0.0303 (8) | 0.0347 (8) | 0.0379 (8) | −0.0093 (6) | −0.0026 (6) | −0.0019 (6) |
| C2 | 0.0316 (8) | 0.0321 (7) | 0.0316 (7) | −0.0088 (6) | −0.0025 (6) | −0.0002 (6) |
| C3 | 0.0349 (8) | 0.0493 (10) | 0.0304 (8) | −0.0102 (7) | −0.0034 (6) | −0.0040 (7) |
| C4 | 0.0319 (8) | 0.0531 (11) | 0.0403 (9) | −0.0068 (7) | −0.0045 (7) | −0.0029 (8) |
| C5 | 0.0382 (9) | 0.0396 (9) | 0.0366 (9) | −0.0040 (7) | 0.0030 (7) | −0.0005 (7) |
| C6 | 0.0509 (11) | 0.0634 (13) | 0.0281 (8) | −0.0073 (9) | −0.0025 (7) | −0.0041 (8) |
| C7 | 0.0399 (9) | 0.0581 (11) | 0.0353 (9) | −0.0084 (8) | −0.0102 (7) | −0.0019 (8) |
| C8 | 0.0476 (11) | 0.0586 (12) | 0.0410 (10) | 0.0007 (9) | 0.0049 (9) | 0.0023 (9) |
| C9 | 0.0305 (7) | 0.0277 (7) | 0.0343 (8) | −0.0040 (6) | −0.0053 (6) | −0.0027 (6) |
| C10 | 0.0369 (8) | 0.0266 (7) | 0.0286 (7) | 0.0011 (6) | −0.0087 (6) | −0.0012 (6) |
| C11 | 0.0485 (10) | 0.0296 (8) | 0.0475 (10) | −0.0071 (7) | −0.0173 (8) | −0.0066 (7) |
| C12 | 0.0383 (9) | 0.0404 (9) | 0.0499 (10) | −0.0132 (7) | −0.0154 (8) | 0.0004 (8) |
| C13 | 0.0309 (8) | 0.0366 (8) | 0.0330 (8) | −0.0033 (6) | −0.0065 (6) | −0.0001 (6) |
| C14 | 0.0382 (8) | 0.0266 (7) | 0.0358 (8) | 0.0039 (6) | −0.0086 (7) | −0.0048 (6) |
| C15 | 0.0534 (11) | 0.0517 (11) | 0.0361 (9) | 0.0024 (9) | −0.0098 (8) | 0.0041 (8) |
| C16 | 0.0641 (15) | 0.0883 (19) | 0.0550 (13) | −0.0054 (13) | −0.0218 (12) | −0.0106 (13) |
| C17 | 0.0414 (10) | 0.0518 (11) | 0.0422 (10) | 0.0050 (8) | −0.0007 (8) | −0.0062 (8) |
| C18 | 0.0602 (16) | 0.111 (3) | 0.097 (2) | −0.0325 (17) | −0.0083 (16) | −0.003 (2) |
| Cd1—O2 | 2.2588 (12) | C6—H6 | 0.9300 |
| Cd1—O2i | 2.2588 (12) | C7—H7 | 0.9300 |
| Cd1—O4 | 2.3192 (14) | C8—N3 | 1.138 (3) |
| Cd1—O4i | 2.3192 (14) | C9—C10 | 1.383 (2) |
| Cd1—N1 | 2.3336 (13) | C9—H9 | 0.9300 |
| Cd1—N1i | 2.3336 (13) | C10—C11 | 1.386 (3) |
| O2—C1 | 1.259 (2) | C10—C14 | 1.508 (2) |
| O3—C14 | 1.233 (2) | C11—C12 | 1.384 (3) |
| O4—H41 | 0.78 (3) | C11—H11 | 0.9300 |
| O4—H42 | 0.87 (3) | C12—H12 | 0.9300 |
| N1—C9 | 1.340 (2) | C13—C12 | 1.382 (3) |
| N1—C13 | 1.335 (2) | C13—H13 | 0.9300 |
| N2—C15 | 1.471 (2) | C14—N2 | 1.336 (2) |
| N2—C17 | 1.469 (2) | C15—C16 | 1.503 (3) |
| C1—O1 | 1.244 (2) | C15—H15A | 0.9700 |
| C2—C1 | 1.516 (2) | C15—H15B | 0.9700 |
| C2—C3 | 1.386 (2) | C16—H16A | 0.9600 |
| C2—C7 | 1.395 (2) | C16—H16B | 0.9600 |
| C3—C4 | 1.384 (2) | C16—H16C | 0.9600 |
| C3—H3 | 0.9300 | C17—C18 | 1.503 (4) |
| C4—H4 | 0.9300 | C17—H17A | 0.9700 |
| C5—C4 | 1.390 (3) | C17—H17B | 0.9700 |
| C5—C6 | 1.387 (3) | C18—H18A | 0.9600 |
| C5—C8 | 1.446 (3) | C18—H18B | 0.9600 |
| C6—C7 | 1.380 (3) | C18—H18C | 0.9600 |
| O2i—Cd1—O2 | 180.00 (6) | C6—C7—H7 | 119.9 |
| O2—Cd1—O4 | 92.15 (5) | N3—C8—C5 | 178.6 (3) |
| O2i—Cd1—O4 | 87.85 (5) | N1—C9—C10 | 123.03 (15) |
| O2—Cd1—O4i | 87.85 (5) | N1—C9—H9 | 118.5 |
| O2i—Cd1—O4i | 92.15 (5) | C10—C9—H9 | 118.5 |
| O2—Cd1—N1 | 92.46 (5) | C9—C10—C11 | 118.26 (15) |
| O2i—Cd1—N1 | 87.54 (5) | C9—C10—C14 | 117.30 (15) |
| O2—Cd1—N1i | 87.54 (5) | C11—C10—C14 | 124.12 (15) |
| O2i—Cd1—N1i | 92.46 (5) | C10—C11—H11 | 120.5 |
| O4—Cd1—O4i | 180.00 (5) | C12—C11—C10 | 118.93 (16) |
| O4—Cd1—N1 | 87.91 (6) | C12—C11—H11 | 120.5 |
| O4i—Cd1—N1 | 92.09 (6) | C11—C12—H12 | 120.5 |
| O4—Cd1—N1i | 92.09 (6) | C13—C12—C11 | 119.07 (16) |
| O4i—Cd1—N1i | 87.91 (6) | C13—C12—H12 | 120.5 |
| N1i—Cd1—N1 | 180.00 (11) | N1—C13—C12 | 122.42 (16) |
| C1—O2—Cd1 | 125.35 (11) | N1—C13—H13 | 118.8 |
| Cd1—O4—H41 | 141.0 (19) | C12—C13—H13 | 118.8 |
| Cd1—O4—H42 | 101.5 (18) | O3—C14—N2 | 123.71 (16) |
| H41—O4—H42 | 110 (3) | O3—C14—C10 | 117.33 (15) |
| C9—N1—Cd1 | 118.45 (11) | N2—C14—C10 | 118.94 (14) |
| C13—N1—Cd1 | 123.28 (11) | N2—C15—C16 | 112.93 (19) |
| C13—N1—C9 | 118.27 (14) | N2—C15—H15A | 109.0 |
| C14—N2—C15 | 124.30 (15) | N2—C15—H15B | 109.0 |
| C14—N2—C17 | 118.61 (15) | C16—C15—H15A | 109.0 |
| C17—N2—C15 | 116.50 (16) | C16—C15—H15B | 109.0 |
| O1—C1—O2 | 126.45 (16) | H15A—C15—H15B | 107.8 |
| O1—C1—C2 | 117.84 (16) | C15—C16—H16A | 109.5 |
| O2—C1—C2 | 115.71 (15) | C15—C16—H16B | 109.5 |
| C3—C2—C1 | 120.04 (15) | C15—C16—H16C | 109.5 |
| C3—C2—C7 | 119.33 (16) | H16A—C16—H16B | 109.5 |
| C7—C2—C1 | 120.63 (16) | H16A—C16—H16C | 109.5 |
| C2—C3—H3 | 119.6 | H16B—C16—H16C | 109.5 |
| C4—C3—C2 | 120.80 (16) | N2—C17—C18 | 112.4 (2) |
| C4—C3—H3 | 119.6 | N2—C17—H17A | 109.1 |
| C3—C4—C5 | 119.28 (17) | N2—C17—H17B | 109.1 |
| C3—C4—H4 | 120.4 | C18—C17—H17A | 109.1 |
| C5—C4—H4 | 120.4 | C18—C17—H17B | 109.1 |
| C4—C5—C8 | 118.55 (19) | H17A—C17—H17B | 107.9 |
| C6—C5—C4 | 120.48 (17) | C17—C18—H18A | 109.5 |
| C6—C5—C8 | 120.97 (18) | C17—C18—H18B | 109.5 |
| C5—C6—H6 | 120.1 | C17—C18—H18C | 109.5 |
| C7—C6—C5 | 119.80 (17) | H18A—C18—H18B | 109.5 |
| C7—C6—H6 | 120.1 | H18A—C18—H18C | 109.5 |
| C2—C7—H7 | 119.9 | H18B—C18—H18C | 109.5 |
| C6—C7—C2 | 120.28 (17) | ||
| O2—Cd1—N1—C9 | 148.84 (12) | C7—C2—C1—O2 | 172.21 (17) |
| O2i—Cd1—N1—C9 | −31.16 (12) | C1—C2—C3—C4 | −177.11 (17) |
| O2—Cd1—N1—C13 | −30.80 (13) | C7—C2—C3—C4 | 2.0 (3) |
| O2i—Cd1—N1—C13 | 149.20 (13) | C1—C2—C7—C6 | 177.33 (19) |
| O4—Cd1—N1—C9 | −119.09 (12) | C3—C2—C7—C6 | −1.7 (3) |
| O4i—Cd1—N1—C9 | 60.91 (12) | C2—C3—C4—C5 | −0.6 (3) |
| O4—Cd1—N1—C13 | 61.26 (13) | C6—C5—C4—C3 | −0.9 (3) |
| O4i—Cd1—N1—C13 | −118.74 (13) | C8—C5—C4—C3 | 178.4 (2) |
| O4—Cd1—O2—C1 | 152.29 (15) | C4—C5—C6—C7 | 1.2 (3) |
| O4i—Cd1—O2—C1 | −27.71 (15) | C8—C5—C6—C7 | −178.2 (2) |
| N1—Cd1—O2—C1 | −119.71 (14) | C5—C6—C7—C2 | 0.2 (3) |
| N1i—Cd1—O2—C1 | 60.29 (14) | N1—C9—C10—C11 | 1.2 (2) |
| Cd1—O2—C1—O1 | 24.2 (3) | N1—C9—C10—C14 | 175.06 (15) |
| Cd1—O2—C1—C2 | −156.03 (11) | C9—C10—C11—C12 | 0.1 (3) |
| Cd1—N1—C9—C10 | 178.26 (12) | C14—C10—C11—C12 | −173.25 (17) |
| C13—N1—C9—C10 | −2.1 (2) | C9—C10—C14—O3 | −67.2 (2) |
| Cd1—N1—C13—C12 | −178.75 (13) | C9—C10—C14—N2 | 111.03 (19) |
| C9—N1—C13—C12 | 1.6 (2) | C11—C10—C14—O3 | 106.3 (2) |
| C14—N2—C15—C16 | 122.5 (2) | C11—C10—C14—N2 | −75.5 (2) |
| C17—N2—C15—C16 | −66.5 (3) | C10—C11—C12—C13 | −0.6 (3) |
| C14—N2—C17—C18 | 95.2 (3) | N1—C13—C12—C11 | −0.3 (3) |
| C15—N2—C17—C18 | −76.3 (3) | O3—C14—N2—C17 | 1.0 (3) |
| C3—C2—C1—O1 | 171.04 (18) | O3—C14—N2—C15 | 171.9 (2) |
| C3—C2—C1—O2 | −8.7 (2) | C10—C14—N2—C17 | −177.05 (17) |
| C7—C2—C1—O1 | −8.0 (3) | C10—C14—N2—C15 | −6.2 (3) |
| H··· | ||||
| O4—H41···O3ii | 0.78 (3) | 2.01 (3) | 2.781 (2) | 169 (3) |
| O4—H42···O1i | 0.87 (3) | 1.84 (3) | 2.670 (2) | 159 (3) |