Literature DB >> 27974537

Ebola Preparedness: Diagnosis Improvement Using Rapid Approaches for Proficiency Testing.

Katherine A Lau1, Torsten Theis1, Joanna Gray1, William D Rawlinson2,3.   

Abstract

The unprecedented 2015 Ebolavirus (EBOV) outbreak in West Africa was declared a public health emergency, making diagnosis and quality of testing a global issue. The accuracy of laboratory diagnostic capacity for EBOV was assessed in 2014 to 2016 using a proficiency testing (PT) strategy developed by the Royal College of Pathologists of Australasia Quality Assurance Programs (RCPAQAP) in Biosecurity. Following a literature search, EBOV-specific gene targets were ranked according to the frequency of their use in published methods. The most commonly used gene regions (nucleoprotein [NP], glycoprotein [GP], and RNA-dependent RNA polymerase [L]) were selected for the design of in vitro RNA transcripts to be included in the simulated EBOV specimens used for EBOV detection with PCR-based assays. Specimens were tested for stability and found to be stable on long-term storage (1 year) at -80°C and on shorter-term storage in lyophilized form (1 week at ambient temperature and a subsequent week at -80°C). These specimens were used in three EBOV PTs offered from April 2014 to March 2016. In the first and third PTs, all laboratories (3/3 and 9/9, respectively) correctly identified specimens containing EBOV RNA transcripts, while in the second PT, all but one laboratory (5/6) correctly confirmed the presence of EBOV. The EBOV PT panel was useful for ensuring the competency of laboratories in detecting EBOV in the absence of readily available clinical samples. The simulated EBOV specimen was safe, stable, and reliable and can be used in lyophilized form for future EBOV PT programs, allowing simplicity of transport.
Copyright © 2017 American Society for Microbiology.

Entities:  

Keywords:  Ebola diagnosis; Ebolavirus; proficiency testing

Mesh:

Year:  2016        PMID: 27974537      PMCID: PMC5328446          DOI: 10.1128/JCM.02173-16

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  19 in total

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Journal:  J Clin Virol       Date:  2015-04-07       Impact factor: 3.168

2.  Comprehensive panel of real-time TaqMan polymerase chain reaction assays for detection and absolute quantification of filoviruses, arenaviruses, and New World hantaviruses.

Authors:  Adrienne R Trombley; Leslie Wachter; Jeffrey Garrison; Valerie A Buckley-Beason; Jordan Jahrling; Lisa E Hensley; Randal J Schoepp; David A Norwood; Augustine Goba; Joseph N Fair; David A Kulesh
Journal:  Am J Trop Med Hyg       Date:  2010-05       Impact factor: 2.345

3.  Development and evaluation of a fluorogenic 5' nuclease assay to detect and differentiate between Ebola virus subtypes Zaire and Sudan.

Authors:  T R Gibb; D A Norwood; N Woollen; E A Henchal
Journal:  J Clin Microbiol       Date:  2001-11       Impact factor: 5.948

4.  Detection of Zaire Ebola virus by real-time reverse transcription-polymerase chain reaction, Sierra Leone, 2014.

Authors:  Licheng Liu; Yang Sun; Brima Kargbo; Chuntao Zhang; Huahua Feng; Huijun Lu; Wenseng Liu; Chengyu Wang; Yi Hu; Yongqiang Deng; Jiafu Jiang; Xiaoping Kang; Honglei Yang; Yongqiang Jiang; Yinhui Yang; David Kargbo; Jun Qian; Weijun Chen
Journal:  J Virol Methods       Date:  2015-05-27       Impact factor: 2.014

5.  Persistence in darkness of virulent alphaviruses, Ebola virus, and Lassa virus deposited on solid surfaces.

Authors:  Jose-Luis Sagripanti; Amanda M Rom; Louis E Holland
Journal:  Arch Virol       Date:  2010-09-15       Impact factor: 2.574

6.  Clinical illness and outcomes in patients with Ebola in Sierra Leone.

Authors:  John S Schieffelin; Jeffrey G Shaffer; Augustine Goba; Michael Gbakie; Stephen K Gire; Andres Colubri; Rachel S G Sealfon; Lansana Kanneh; Alex Moigboi; Mambu Momoh; Mohammed Fullah; Lina M Moses; Bethany L Brown; Kristian G Andersen; Sarah Winnicki; Stephen F Schaffner; Daniel J Park; Nathan L Yozwiak; Pan-Pan Jiang; David Kargbo; Simbirie Jalloh; Mbalu Fonnie; Vandi Sinnah; Issa French; Alice Kovoma; Fatima K Kamara; Veronica Tucker; Edwin Konuwa; Josephine Sellu; Ibrahim Mustapha; Momoh Foday; Mohamed Yillah; Franklyn Kanneh; Sidiki Saffa; James L B Massally; Matt L Boisen; Luis M Branco; Mohamed A Vandi; Donald S Grant; Christian Happi; Sahr M Gevao; Thomas E Fletcher; Robert A Fowler; Daniel G Bausch; Pardis C Sabeti; S Humarr Khan; Robert F Garry
Journal:  N Engl J Med       Date:  2014-10-29       Impact factor: 91.245

7.  Rapid detection of filoviruses by real-time TaqMan polymerase chain reaction assays.

Authors:  Yi Huang; Hongping Wei; Yunpeng Wang; Zhengli Shi; Herve Raoul; Zhiming Yuan
Journal:  Virol Sin       Date:  2012-09-21       Impact factor: 4.327

8.  Impact of specimen handling and storage on detection of hepatitis C virus RNA.

Authors:  M P Busch; J C Wilber; P Johnson; L Tobler; C S Evans
Journal:  Transfusion       Date:  1992-06       Impact factor: 3.157

9.  Evaluation of hepatitis C virus RNA stability in room temperature and multiple freeze-thaw cycles by COBAS AmpliPrep/COBAS TaqMan HCV.

Authors:  Fusun Comert; Elif Aktas; H Agah Terzi; Canan Kulah; Yucel Ustundag; Furuzan Kokturk; Selim Aydemir
Journal:  Diagn Microbiol Infect Dis       Date:  2012-10-26       Impact factor: 2.803

10.  Rapid diagnosis of Ebola hemorrhagic fever by reverse transcription-PCR in an outbreak setting and assessment of patient viral load as a predictor of outcome.

Authors:  Jonathan S Towner; Pierre E Rollin; Daniel G Bausch; Anthony Sanchez; Sharon M Crary; Martin Vincent; William F Lee; Christina F Spiropoulou; Thomas G Ksiazek; Mathew Lukwiya; Felix Kaducu; Robert Downing; Stuart T Nichol
Journal:  J Virol       Date:  2004-04       Impact factor: 5.103

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  3 in total

1.  Proficiency testing for SARS-CoV-2 whole genome sequencing.

Authors:  Katherine A Lau; Kristy Horan; Anders Gonçalves da Silva; Alexa Kaufer; Torsten Theis; Susan A Ballard; William D Rawlinson
Journal:  Pathology       Date:  2022-06-29       Impact factor: 5.335

2.  Status, quality and specific needs of Ebola virus diagnostic capacity and capability in laboratories of the two European preparedness laboratory networks EMERGE and EVD-LabNet.

Authors:  Chantal B Reusken; Ramona Mögling; Pieter W Smit; Roland Grunow; Giuseppe Ippolito; Antonino Di Caro; Marion Koopmans
Journal:  Euro Surveill       Date:  2018-05

3.  Proficiency testing for the detection of Middle East respiratory syndrome coronavirus demonstrates global capacity to detect Middle East respiratory syndrome coronavirus.

Authors:  Torsten Theis; Katherine A Lau; Joanna L Gray; Christopher J Oxenford; Gregory J Walker; William D Rawlinson
Journal:  J Med Virol       Date:  2018-08-27       Impact factor: 2.327

  3 in total

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