Literature DB >> 27966496

Recent excitements in protein NMR: Large proteins and biologically relevant dynamics.

Sai Chaitanya Chiliveri1, Mandar V Deshmukh.   

Abstract

The advent of Transverse Relaxation Optimized SpectroscopY (TROSY) and perdeuteration allowed biomolecular NMR spectroscopists to overcome the size limitation barrier (approx. 20 kDa) in de novo structure determination of proteins. The utility of these techniques was immediately demonstrated on large proteins and protein complexes (e.g. GroELGroES, ClpP protease, Hsp90-p53, 20S proteasome, etc.). Further, recent methodological developments such as Residual Dipolar Couplings and Paramagnetic Relaxation Enhancement allowed accurate measurement of long-range structural restraints. Additionally, Carr-Purcell-Meiboom-Gill (CPMG), rotating frame relaxation experiments (R1(rho)) and saturation transfer experiments (CEST and DEST) created never-before accessibility to the (mu)s-ms timescale dynamic parameters that led to the deeper understanding of biological processes. Meanwhile, the excitement in the field continued with a series of developments in the fast data acquisition methods allowing rapid structural studies on less stable proteins. This review aims to discuss important developments in the field of biomolecular NMR spectroscopy in the recent past, i.e., in the post TROSY era. These developments not only gave access to the structural studies of large protein assemblies, but also revolutionized tools in the arsenal of today's biomolecular NMR and point to a bright future of biomolecular NMR spectroscopy.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27966496     DOI: 10.1007/s12038-016-9640-y

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  90 in total

Review 1.  Small-molecule inhibitors of protein-protein interactions: progressing towards the dream.

Authors:  Michelle R Arkin; James A Wells
Journal:  Nat Rev Drug Discov       Date:  2004-04       Impact factor: 84.694

2.  Structural analysis of protein interfaces from 13C direct-detected paramagnetic relaxation enhancements.

Authors:  Tobias Madl; Isabella C Felli; Ivano Bertini; Michael Sattler
Journal:  J Am Chem Soc       Date:  2010-06-02       Impact factor: 15.419

3.  The Quest for Simplicity: Remarks on the Free-Approach Models.

Authors:  Łukasz Jaremko; Mariusz Jaremko; Michał Nowakowski; Andrzej Ejchart
Journal:  J Phys Chem B       Date:  2015-08-28       Impact factor: 2.991

4.  Probing exchange kinetics and atomic resolution dynamics in high-molecular-weight complexes using dark-state exchange saturation transfer NMR spectroscopy.

Authors:  Nicolas L Fawzi; Jinfa Ying; Dennis A Torchia; G Marius Clore
Journal:  Nat Protoc       Date:  2012-07-19       Impact factor: 13.491

5.  Internal mobility in the partially folded DNA binding and dimerization domains of GAL4: NMR analysis of the N-H spectral density functions.

Authors:  J F Lefevre; K T Dayie; J W Peng; G Wagner
Journal:  Biochemistry       Date:  1996-02-27       Impact factor: 3.162

6.  Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 A resolution.

Authors:  J M Passner; S C Schultz; T A Steitz
Journal:  J Mol Biol       Date:  2000-12-15       Impact factor: 5.469

7.  Trapping moving targets with small molecules.

Authors:  Gregory M Lee; Charles S Craik
Journal:  Science       Date:  2009-04-10       Impact factor: 47.728

8.  Spectral density function mapping using 15N relaxation data exclusively.

Authors:  N A Farrow; O Zhang; A Szabo; D A Torchia; L E Kay
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

9.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

10.  Structural Integrity of the A147T Polymorph of Mammalian TSPO.

Authors:  Mariusz Jaremko; Łukasz Jaremko; Karin Giller; Stefan Becker; Markus Zweckstetter
Journal:  Chembiochem       Date:  2015-06-10       Impact factor: 3.164

View more
  4 in total

Review 1.  Using NMR spectroscopy to investigate the role played by copper in prion diseases.

Authors:  Rawiah A Alsiary; Mawadda Alghrably; Abdelhamid Saoudi; Suliman Al-Ghamdi; Lukasz Jaremko; Mariusz Jaremko; Abdul-Hamid Emwas
Journal:  Neurol Sci       Date:  2020-04-24       Impact factor: 3.307

2.  Intact Transition Epitope Mapping - Targeted High-Energy Rupture of Extracted Epitopes (ITEM-THREE).

Authors:  Bright D Danquah; Claudia Röwer; KwabenaF M Opuni; Reham El-Kased; David Frommholz; Harald Illges; Cornelia Koy; Michael O Glocker
Journal:  Mol Cell Proteomics       Date:  2019-05-30       Impact factor: 5.911

3.  Expanding the structural biology toolbox with single-molecule holography.

Authors:  Federico Forneris; Andrea Mattevi
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-02       Impact factor: 11.205

Review 4.  Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics.

Authors:  Ashutosh Srivastava; Tetsuro Nagai; Arpita Srivastava; Osamu Miyashita; Florence Tama
Journal:  Int J Mol Sci       Date:  2018-10-30       Impact factor: 5.923

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.