Literature DB >> 26301699

The Quest for Simplicity: Remarks on the Free-Approach Models.

Łukasz Jaremko1,2, Mariusz Jaremko1, Michał Nowakowski3, Andrzej Ejchart4.   

Abstract

Nuclear magnetic relaxation provides a powerful method giving insight into molecular motions at atomic resolution on a broad time scale. Dynamics of biological macromolecules has been widely exploited by measuring (15)N and (13)C relaxation data. Interpretation of these data relies almost exclusively on the use of the model-free approach (MFA) and its extended version (EMFA) which requires no particular physical model of motion and a small number of parameters. It is shown that EMFA is often unable to cope with three different time scales and fails to describe slow internal motions properly. In contrast to EMFA, genuine MFA with two time scales can reproduce internal motions slower than the overall tumbling. It is also shown that MFA and simplified EMFA are equivalent with respect to the values of the N-H bond length and chemical shift anisotropy. Therefore, the vast majority of (15)N relaxation data for proteins can be satisfactorily interpreted solely with MFA.

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Year:  2015        PMID: 26301699     DOI: 10.1021/acs.jpcb.5b07181

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

Review 1.  Recent excitements in protein NMR: Large proteins and biologically relevant dynamics.

Authors:  Sai Chaitanya Chiliveri; Mandar V Deshmukh
Journal:  J Biosci       Date:  2016-12       Impact factor: 1.826

2.  Characterization of Internal Protein Dynamics and Conformational Entropy by NMR Relaxation.

Authors:  Matthew A Stetz; José A Caro; Sravya Kotaru; Xuejun Yao; Bryan S Marques; Kathleen G Valentine; A Joshua Wand
Journal:  Methods Enzymol       Date:  2018-12-08       Impact factor: 1.600

3.  Rapid Determination of Fast Protein Dynamics from NMR Chemical Exchange Saturation Transfer Data.

Authors:  Yina Gu; Alexandar L Hansen; Yu Peng; Rafael Brüschweiler
Journal:  Angew Chem Int Ed Engl       Date:  2016-01-28       Impact factor: 15.336

4.  Fast evaluation of protein dynamics from deficient 15N relaxation data.

Authors:  Łukasz Jaremko; Mariusz Jaremko; Andrzej Ejchart; Michał Nowakowski
Journal:  J Biomol NMR       Date:  2018-03-28       Impact factor: 2.835

5.  Dynamic 15N{1H} NOE measurements: a tool for studying protein dynamics.

Authors:  Vladlena Kharchenko; Michal Nowakowski; Mariusz Jaremko; Andrzej Ejchart; Łukasz Jaremko
Journal:  J Biomol NMR       Date:  2020-09-12       Impact factor: 2.835

  5 in total

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