Literature DB >> 27956614

Molecular profiling of single circulating tumor cells from lung cancer patients.

Seung-Min Park1,2, Dawson J Wong3, Chin Chun Ooi4, David M Kurtz2,5,6, Ophir Vermesh1,2, Amin Aalipour1,2, Susie Suh7, Kelsey L Pian8, Jacob J Chabon9, Sang Hun Lee10, Mehran Jamali1, Carmen Say11, Justin N Carter11, Luke P Lee10, Ware G Kuschner12,13, Erich J Schwartz14, Joseph B Shrager15, Joel W Neal6,16, Heather A Wakelee6,16, Maximilian Diehn9,11,16,17, Viswam S Nair18,13,17, Shan X Wang19,8,17, Sanjiv S Gambhir18,2,17.   

Abstract

Circulating tumor cells (CTCs) are established cancer biomarkers for the "liquid biopsy" of tumors. Molecular analysis of single CTCs, which recapitulate primary and metastatic tumor biology, remains challenging because current platforms have limited throughput, are expensive, and are not easily translatable to the clinic. Here, we report a massively parallel, multigene-profiling nanoplatform to compartmentalize and analyze hundreds of single CTCs. After high-efficiency magnetic collection of CTC from blood, a single-cell nanowell array performs CTC mutation profiling using modular gene panels. Using this approach, we demonstrated multigene expression profiling of individual CTCs from non-small-cell lung cancer (NSCLC) patients with remarkable sensitivity. Thus, we report a high-throughput, multiplexed strategy for single-cell mutation profiling of individual lung cancer CTCs toward minimally invasive cancer therapy prediction and disease monitoring.

Entities:  

Keywords:  circulating tumor cells; microfluidics; rare-cell sorting; reverse transcription-PCR; single-cell analysis

Mesh:

Substances:

Year:  2016        PMID: 27956614      PMCID: PMC5206556          DOI: 10.1073/pnas.1608461113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  56 in total

1.  Combined detection of CEA, CK-19 and c-met mRNAs in peripheral blood: a highly sensitive panel for potential molecular diagnosis of non-small cell lung cancer.

Authors:  Chau-Chyun Sheu; Mei-Yin Chang; Huang-Chou Chang; Jong-Rung Tsai; Shiu-Ru Lin; Shun-Jen Chang; Jhi-Jhu Hwang; Ming-Shyan Huang; Inn-Wen Chong
Journal:  Oncology       Date:  2006-06-29       Impact factor: 2.935

2.  Biodegradable nano-films for capture and non-invasive release of circulating tumor cells.

Authors:  Wei Li; Eduardo Reátegui; Myoung-Hwan Park; Steven Castleberry; Jason Z Deng; Bryan Hsu; Sarah Mayner; Anne E Jensen; Lecia V Sequist; Shyamala Maheswaran; Daniel A Haber; Mehmet Toner; Shannon L Stott; Paula T Hammond
Journal:  Biomaterials       Date:  2015-06-20       Impact factor: 12.479

3.  First-line crizotinib versus chemotherapy in ALK-positive lung cancer.

Authors:  Benjamin J Solomon; Tony Mok; Dong-Wan Kim; Yi-Long Wu; Kazuhiko Nakagawa; Tarek Mekhail; Enriqueta Felip; Federico Cappuzzo; Jolanda Paolini; Tiziana Usari; Shrividya Iyer; Arlene Reisman; Keith D Wilner; Jennifer Tursi; Fiona Blackhall
Journal:  N Engl J Med       Date:  2014-12-04       Impact factor: 91.245

4.  Analysis of circulating tumor cells in patients with non-small cell lung cancer using epithelial marker-dependent and -independent approaches.

Authors:  Matthew G Krebs; Jian-Mei Hou; Robert Sloane; Lee Lancashire; Lynsey Priest; Daisuke Nonaka; Tim H Ward; Alison Backen; Glen Clack; Andrew Hughes; Malcolm Ranson; Fiona H Blackhall; Caroline Dive
Journal:  J Thorac Oncol       Date:  2012-02       Impact factor: 15.609

5.  Reproducible copy number variation patterns among single circulating tumor cells of lung cancer patients.

Authors:  Xiaohui Ni; Minglei Zhuo; Zhe Su; Jianchun Duan; Yan Gao; Zhijie Wang; Chenghang Zong; Hua Bai; Alec R Chapman; Jun Zhao; Liya Xu; Tongtong An; Qi Ma; Yuyan Wang; Meina Wu; Yu Sun; Shuhang Wang; Zhenxiang Li; Xiaodan Yang; Jun Yong; Xiao-Dong Su; Youyong Lu; Fan Bai; X Sunney Xie; Jie Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

6.  The diagnostic and prognostic relevance of human telomerase reverse transcriptase mRNA expression detected in situ in patients with nonsmall cell lung carcinoma.

Authors:  Yuka Fujita; Toshiaki Fujikane; Satoru Fujiuchi; Yutaka Nishigaki; Yasuhiro Yamazaki; Atsushi Nagase; Tetsuo Shimizu; Yoshinobu Ohsaki; Kenjiro Kikuchi
Journal:  Cancer       Date:  2003-09-01       Impact factor: 6.860

7.  Dual transcript and protein quantification in a massive single cell array.

Authors:  Seung-Min Park; Jae Young Lee; Soongweon Hong; Sang Hun Lee; Ivan K Dimov; Hojae Lee; Susie Suh; Qiong Pan; Keyu Li; Anna M Wu; Shannon M Mumenthaler; Parag Mallick; Luke P Lee
Journal:  Lab Chip       Date:  2016-08-22       Impact factor: 6.799

8.  Molecular characterization of circulating tumor cells in large quantities of contaminating leukocytes by a multiplex real-time PCR.

Authors:  Anieta M Sieuwerts; Jaco Kraan; Joan Bolt-de Vries; Petra van der Spoel; Bianca Mostert; John W M Martens; Jan-Willem Gratama; Stefan Sleijfer; John A Foekens
Journal:  Breast Cancer Res Treat       Date:  2008-12-30       Impact factor: 4.872

9.  Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer.

Authors:  Jens G Lohr; Viktor A Adalsteinsson; Kristian Cibulskis; Atish D Choudhury; Mara Rosenberg; Peter Cruz-Gordillo; Joshua M Francis; Cheng-Zhong Zhang; Alex K Shalek; Rahul Satija; John J Trombetta; Diana Lu; Naren Tallapragada; Narmin Tahirova; Sora Kim; Brendan Blumenstiel; Carrie Sougnez; Alarice Lowe; Bang Wong; Daniel Auclair; Eliezer M Van Allen; Mari Nakabayashi; Rosina T Lis; Gwo-Shu M Lee; Tiantian Li; Matthew S Chabot; Amy Ly; Mary-Ellen Taplin; Thomas E Clancy; Massimo Loda; Aviv Regev; Matthew Meyerson; William C Hahn; Philip W Kantoff; Todd R Golub; Gad Getz; Jesse S Boehm; J Christopher Love
Journal:  Nat Biotechnol       Date:  2014-04-20       Impact factor: 54.908

10.  Sensitive capture of circulating tumour cells by functionalized graphene oxide nanosheets.

Authors:  Hyeun Joong Yoon; Tae Hyun Kim; Zhuo Zhang; Ebrahim Azizi; Trinh M Pham; Costanza Paoletti; Jules Lin; Nithya Ramnath; Max S Wicha; Daniel F Hayes; Diane M Simeone; Sunitha Nagrath
Journal:  Nat Nanotechnol       Date:  2013-09-29       Impact factor: 39.213

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  38 in total

1.  Flow Homogenization Enables a Massively Parallel Fluidic Design for High-throughput and Multiplexed Cell Isolation.

Authors:  Chinchun Ooi; Christopher M Earhart; Casey E Hughes; Jung-Rok Lee; Dawson J Wong; Robert J Wilson; Rajat Rohatgi; Shan X Wang
Journal:  Adv Mater Technol       Date:  2020-03-18

Review 2.  Critical issues in the clinical application of liquid biopsy in non-small cell lung cancer.

Authors:  Mariangela Manicone; Cristina Poggiana; Antonella Facchinetti; Rita Zamarchi
Journal:  J Thorac Dis       Date:  2017-10       Impact factor: 2.895

3.  Somatic copy number profiling from hepatocellular carcinoma circulating tumor cells.

Authors:  Colin M Court; Shuang Hou; Lian Liu; Paul Winograd; Benjamin J DiPardo; Sean X Liu; Pin-Jung Chen; Yazhen Zhu; Matthew Smalley; Ryan Zhang; Saeed Sadeghi; Richard S Finn; Fady M Kaldas; Ronald W Busuttil; Xianghong J Zhou; Hsian-Rong Tseng; James S Tomlinson; Thomas G Graeber; Vatche G Agopian
Journal:  NPJ Precis Oncol       Date:  2020-07-02

4.  Multigene profiling of single circulating tumor cells.

Authors:  Seung-Min Park; Dawson J Wong; Chin Chun Ooi; Jared C Nesvet; Viswam S Nair; Shan X Wang; Sanjiv S Gambhir
Journal:  Mol Cell Oncol       Date:  2017-03-07

5.  Engineered immune cells as highly sensitive cancer diagnostics.

Authors:  Amin Aalipour; Hui-Yen Chuang; Surya Murty; Aloma L D'Souza; Seung-Min Park; Gunsagar S Gulati; Chirag B Patel; Corinne Beinat; Federico Simonetta; Ivana Martinić; Gayatri Gowrishankar; Elise R Robinson; Eamon Aalipour; Zahra Zhian; Sanjiv S Gambhir
Journal:  Nat Biotechnol       Date:  2019-03-18       Impact factor: 54.908

Review 6.  Liquid biopsies in lung cancer-time to implement research technologies in routine care?

Authors:  Linda Köhn; Mikael Johansson; Kjell Grankvist; Jonas Nilsson
Journal:  Ann Transl Med       Date:  2017-07

7.  Single-Cell Analysis of BRAFV600E and NRASQ61R Mutation Status in Melanoma Cell Lines as Method Generation for Circulating Melanoma Cells.

Authors:  Joseph W Po; Yafeng Ma; Alison W S Luk; David Lynch; Bavanthi Balakrishnar; Daniel Brungs; Farhad Azimi; Adam Cooper; Erin Saricilar; Vinay Murthy; Paul de Souza; Therese M Becker
Journal:  Methods Mol Biol       Date:  2021

8.  Enrichment and detection of circulating tumor cells by immunomagnetic beads and flow cytometry.

Authors:  Lei Hu; Xueran Chen; Meng Chen; Jinman Fang; Jinfu Nie; Haiming Dai
Journal:  Biotechnol Lett       Date:  2020-09-21       Impact factor: 2.461

Review 9.  Biology and clinical significance of circulating tumor cell subpopulations in lung cancer.

Authors:  Linda O'Flaherty; Harriet Wikman; Klaus Pantel
Journal:  Transl Lung Cancer Res       Date:  2017-08

10.  Characterization of carfilzomib-resistant non-small cell lung cancer cell lines.

Authors:  Neale T Hanke; Elliot Imler; Marilyn T Marron; Bruce E Seligmann; Linda L Garland; Amanda F Baker
Journal:  J Cancer Res Clin Oncol       Date:  2018-05-15       Impact factor: 4.553

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