Literature DB >> 27924134

A physical map of important QTLs, functional markers and genes available for sesame breeding programs.

Komivi Dossa1.   

Abstract

Sesame is one of the oldest oilseed crops grown mainly in Africa and Asia. Although genetic and genomic studies on sesame have started late, the past 5 years have witnessed extensive progresses in these areas on this crop. Important genomic sequence resources such as functional markers, genes and QTLs linked to agronomically important traits, have been generated through linkage mapping and association analysis to assist sesame improvement programs. However, most of these data are scattered in different maps making them hard to be exploited efficiently in breeding programs. In this study, we report a comprehensive physical map gathering 151 published genomic sequence resources which highlighted some hotspot functional regions in the sesame genome. Moreover, 83,135 non-redundant SSRs have been supplied along with their physical position and motif composition. This will assist future research in fine mapping or pinpointing more functional genes based on the already published QTLs and functional markers. This physical map represents a good landmark for further non-overlapping genetic and genomic studies working towards sesame improvement.

Entities:  

Keywords:  Functional genes; Physical map; QTL; SSR; Sesamum indicum

Year:  2016        PMID: 27924134      PMCID: PMC5120042          DOI: 10.1007/s12298-016-0385-8

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN: 0974-0430


  16 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  SciRoKo: a new tool for whole genome microsatellite search and investigation.

Authors:  Robert Kofler; Christian Schlötterer; Tamas Lelley
Journal:  Bioinformatics       Date:  2007-04-26       Impact factor: 6.937

3.  Sinbase: an integrated database to study genomics, genetics and comparative genomics in Sesamum indicum.

Authors:  Linhai Wang; Jingyin Yu; Donghua Li; Xiurong Zhang
Journal:  Plant Cell Physiol       Date:  2014-12-04       Impact factor: 4.927

4.  Association analysis for quality traits in a diverse panel of Chinese sesame (Sesamum indicum L.) germplasm.

Authors:  Wenliang Wei; Yanxin Zhang; Haixia Lü; Donghua Li; Linhai Wang; Xiurong Zhang
Journal:  J Integr Plant Biol       Date:  2013-08       Impact factor: 7.061

Review 5.  Value addition in sesame: A perspective on bioactive components for enhancing utility and profitability.

Authors:  Niti Pathak; A K Rai; Ratna Kumari; K V Bhat
Journal:  Pharmacogn Rev       Date:  2014-07

6.  Association mapping of seed oil and protein content in Sesamum indicum L. using SSR markers.

Authors:  Chun Li; Hongmei Miao; Libin Wei; Tide Zhang; Xiuhua Han; Haiyang Zhang
Journal:  PLoS One       Date:  2014-08-25       Impact factor: 3.240

7.  Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress.

Authors:  Komivi Dossa; Xin Wei; Donghua Li; Daniel Fonceka; Yanxin Zhang; Linhai Wang; Jingyin Yu; Liao Boshou; Diaga Diouf; Ndiaga Cissé; Xiurong Zhang
Journal:  BMC Plant Biol       Date:  2016-07-30       Impact factor: 4.215

8.  Genetic discovery for oil production and quality in sesame.

Authors:  Xin Wei; Kunyan Liu; Yanxin Zhang; Qi Feng; Linhai Wang; Yan Zhao; Donghua Li; Qiang Zhao; Xiaodong Zhu; Xiaofeng Zhu; Wenjun Li; Danlin Fan; Yuan Gao; Yiqi Lu; Xianmei Zhang; Xiumei Tang; Congcong Zhou; Chuanrang Zhu; Lifeng Liu; Ruichun Zhong; Qilin Tian; Ziruo Wen; Qijun Weng; Bin Han; Xuehui Huang; Xiurong Zhang
Journal:  Nat Commun       Date:  2015-10-19       Impact factor: 14.919

9.  High-density genetic map construction and QTLs analysis of grain yield-related traits in sesame (Sesamum indicum L.) based on RAD-Seq techonology.

Authors:  Kun Wu; Hongyan Liu; Minmin Yang; Ye Tao; Huihui Ma; Wenxiong Wu; Yang Zuo; Yingzhong Zhao
Journal:  BMC Plant Biol       Date:  2014-10-10       Impact factor: 4.215

10.  Analysis of Genetic Diversity and Population Structure of Sesame Accessions from Africa and Asia as Major Centers of Its Cultivation.

Authors:  Komivi Dossa; Xin Wei; Yanxin Zhang; Daniel Fonceka; Wenjuan Yang; Diaga Diouf; Boshou Liao; Ndiaga Cissé; Xiurong Zhang
Journal:  Genes (Basel)       Date:  2016-04-12       Impact factor: 4.096

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  7 in total

1.  Physical mapping of QTL associated with agronomic and end-use quality traits in spring wheat under conventional and organic management systems.

Authors:  Kassa Semagn; Muhammad Iqbal; Hua Chen; Enid Perez-Lara; Darcy H Bemister; Rongrong Xiang; Jun Zou; Muhammad Asif; Atif Kamran; Amidou N'Diaye; Harpinder Randhawa; Brian L Beres; Curtis Pozniak; Dean Spaner
Journal:  Theor Appl Genet       Date:  2021-07-31       Impact factor: 5.699

2.  Development of Highly Informative Genome-Wide Single Sequence Repeat Markers for Breeding Applications in Sesame and Construction of a Web Resource: SisatBase.

Authors:  Komivi Dossa; Jingyin Yu; Boshou Liao; Ndiaga Cisse; Xiurong Zhang
Journal:  Front Plant Sci       Date:  2017-08-22       Impact factor: 5.753

Review 3.  The Emerging Oilseed Crop Sesamum indicum Enters the "Omics" Era.

Authors:  Komivi Dossa; Diaga Diouf; Linhai Wang; Xin Wei; Yanxin Zhang; Mareme Niang; Daniel Fonceka; Jingyin Yu; Marie A Mmadi; Louis W Yehouessi; Boshou Liao; Xiurong Zhang; Ndiaga Cisse
Journal:  Front Plant Sci       Date:  2017-06-30       Impact factor: 5.753

4.  The genetic basis of drought tolerance in the high oil crop Sesamum indicum.

Authors:  Komivi Dossa; Donghua Li; Rong Zhou; Jingyin Yu; Linhai Wang; Yanxin Zhang; Jun You; Aili Liu; Marie A Mmadi; Daniel Fonceka; Diaga Diouf; Ndiaga Cissé; Xin Wei; Xiurong Zhang
Journal:  Plant Biotechnol J       Date:  2019-03-05       Impact factor: 9.803

Review 5.  Lignans of Sesame (Sesamum indicum L.): A Comprehensive Review.

Authors:  Mebeaselassie Andargie; Maria Vinas; Anna Rathgeb; Evelyn Möller; Petr Karlovsky
Journal:  Molecules       Date:  2021-02-07       Impact factor: 4.411

6.  Physical Mapping of QTL in Four Spring Wheat Populations under Conventional and Organic Management Systems. I. Earliness.

Authors:  Kassa Semagn; Muhammad Iqbal; Hua Chen; Enid Perez-Lara; Darcy H Bemister; Rongrong Xiang; Jun Zou; Muhammad Asif; Atif Kamran; Amidou N'Diaye; Harpinder Randhawa; Curtis Pozniak; Dean Spaner
Journal:  Plants (Basel)       Date:  2021-04-23

7.  Genome-Wide Association Studies of 39 Seed Yield-Related Traits in Sesame (Sesamum indicum L.).

Authors:  Rong Zhou; Komivi Dossa; Donghua Li; Jingyin Yu; Jun You; Xin Wei; Xiurong Zhang
Journal:  Int J Mol Sci       Date:  2018-09-17       Impact factor: 5.923

  7 in total

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