Literature DB >> 17463017

SciRoKo: a new tool for whole genome microsatellite search and investigation.

Robert Kofler1, Christian Schlötterer, Tamas Lelley.   

Abstract

UNLABELLED: SciRoKo is a user-friendly software tool for the identification of microsatellites in genomic sequences. The combination of an extremely fast search algorithm with a built-in summary statistic tool makes SciRoKo an excellent tool for full genome analysis. Compared to other already existing tools, SciRoKo also allows the analysis of compound microsatellites. AVAILABILITY: free for use: www.kofler.or.at/Bioinformatics. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Mesh：

Year:  2007        PMID： 17463017     DOI： 10.1093/bioinformatics/btm157

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  147 in total

1.  Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1.

Authors:  Robert Kofler; Jan Bartos; Li Gong; Gertraud Stift; Pavla Suchánková; Hana Simková; Maria Berenyi; Kornel Burg; Jaroslav Dolezel; Tamas Lelley
Journal:  Theor Appl Genet       Date:  2008-07-15       Impact factor: 5.699

Review 2.  Rapid and cost-effective screening of newly identified microsatellite loci by high-resolution melting analysis.

Authors:  Wolfgang Arthofer; Florian M Steiner; Birgit C Schlick-Steiner
Journal:  Mol Genet Genomics       Date:  2011-08-17       Impact factor: 3.291

3.  HighSSR: high-throughput SSR characterization and locus development from next-gen sequencing data.

Authors:  Alexander Churbanov; Rachael Ryan; Nabeeh Hasan; Donovan Bailey; Haofeng Chen; Brook Milligan; Peter Houde
Journal:  Bioinformatics       Date:  2012-09-06       Impact factor: 6.937

4.  Searching microsatellites in DNA sequences: approaches used and tools developed.

Authors:  Atul Grover; Veenu Aishwarya; P C Sharma
Journal:  Physiol Mol Biol Plants       Date:  2011-12-23

5.  A physical map of important QTLs, functional markers and genes available for sesame breeding programs.

Authors:  Komivi Dossa
Journal:  Physiol Mol Biol Plants       Date:  2016-10-08

6.  Genome-wide analysis of simple sequence repeats in marine animals-a comparative approach.

Authors:  Qun Jiang; Qi Li; Hong Yu; Lingfeng Kong
Journal:  Mar Biotechnol (NY)       Date:  2014-06-19       Impact factor: 3.619

7.  Massively parallel pyrosequencing-based transcriptome analyses of small brown planthopper (Laodelphax striatellus), a vector insect transmitting rice stripe virus (RSV).

Authors:  Fujie Zhang; Hongyan Guo; Huajun Zheng; Tong Zhou; Yijun Zhou; Shengyue Wang; Rongxiang Fang; Wei Qian; Xiaoying Chen
Journal:  BMC Genomics       Date:  2010-05-13       Impact factor: 3.969

8.  Conservation of human microsatellites across 450 million years of evolution.

Authors:  Emmanuel Buschiazzo; Neil J Gemmell
Journal:  Genome Biol Evol       Date:  2010-02-08       Impact factor: 3.416

9.  Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome.

Authors:  Shi Wang; Lingling Zhang; Eli Meyer; Zhenmin Bao
Journal:  Biol Direct       Date:  2010-04-15       Impact factor: 4.540

10.  Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites.

Authors:  Robert Kofler; Christian Schlötterer; Evita Luschützky; Tamas Lelley
Journal:  BMC Genomics       Date:  2008-12-17       Impact factor: 3.969
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