Literature DB >> 27917031

A New Perspective on Sustainable Soil Remediation-Case Study Suggests Novel Fungal Genera Could Facilitate in situ Biodegradation of Hazardous Contaminants.

L M Czaplicki1, E Cooper2, P L Ferguson3, H M Stapleton4, R Vilgalys5, C K Gunsch6.   

Abstract

Deciding upon a cost effective and sustainable method to address soil pollution is a challenge for many remedial project managers. High pressure to quickly achieve cleanup goals pushes for energy-intensive remedies that rapidly address the contaminants of concern with established technologies, often leaving little room for research and development especially for slower treatment technologies, such as bioremediation, for the more heavily polluted sites. In the present case study, new genomic approaches have been leveraged to assess fungal biostimulation potential in soils polluted with particularly persistent hydrophobic contaminants. This new approach provides insights into the genetic functions available at a given site in a way never before possible. In particular, this article presents a case study where next generation sequencing (NGS) has been used to categorize fungi in soils from the Atlantic Wood Industries Superfund site in Portsmouth, Virginia. Data suggest that original attempts to harness fungi for bioremediation may have focused on fungal genera poorly suited to survive under heavily polluted site conditions, and that more targeted approaches relying on native indigenous fungi which are better equipped to survive under site specific conditions may be more appropriate.

Entities:  

Year:  2016        PMID: 27917031      PMCID: PMC5130160          DOI: 10.1002/rem.21458

Source DB:  PubMed          Journal:  Remediation (N Y)        ISSN: 1051-5658


  25 in total

1.  Mechanisms white rot fungi use to degrade pollutants.

Authors:  D P Barr; S D Aust
Journal:  Environ Sci Technol       Date:  1994-02-01       Impact factor: 9.028

2.  Biodegradation of polycyclic aromatic hydrocarbons (PAHs) by Cladosporium sphaerospermum isolated from an aged PAH contaminated soil.

Authors:  Olivier Potin; Etienne Veignie; Catherine Rafin
Journal:  FEMS Microbiol Ecol       Date:  2004-12-27       Impact factor: 4.194

3.  Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.

Authors:  Qiong Wang; George M Garrity; James M Tiedje; James R Cole
Journal:  Appl Environ Microbiol       Date:  2007-06-22       Impact factor: 4.792

4.  Practical innovations for high-throughput amplicon sequencing.

Authors:  Derek S Lundberg; Scott Yourstone; Piotr Mieczkowski; Corbin D Jones; Jeffery L Dangl
Journal:  Nat Methods       Date:  2013-09-01       Impact factor: 28.547

5.  Taking the fungal highway: mobilization of pollutant-degrading bacteria by fungi.

Authors:  Stefanie Kohlmeier; Theo H M Smits; Roseanne M Ford; Christoph Keel; Hauke Harms; Lukas Y Wick
Journal:  Environ Sci Technol       Date:  2005-06-15       Impact factor: 9.028

6.  Penicillium chrysogenum var. halophenolicum, a new halotolerant strain with potential in the remediation of aromatic compounds in high salt environments.

Authors:  Ana Lúcia Leitão; Carlos García-Estrada; Ricardo Vicente Ullán; Sumaya Ferreira Guedes; Patricia Martín-Jiménez; Benilde Mendes; Juan Francisco Martín
Journal:  Microbiol Res       Date:  2011-04-27       Impact factor: 5.415

7.  Identification of Petriella setifera LH and characterization of its crude carboxymethyl cellulase for application in denim biostoning.

Authors:  Xi-Hua Zhao; Wei Wang; Dong-Zhi Wei
Journal:  J Microbiol       Date:  2013-03-02       Impact factor: 3.422

8.  Effect of biostimulation and bioaugmentation on degradation of polyurethane buried in soil.

Authors:  L Cosgrove; P L McGeechan; P S Handley; G D Robson
Journal:  Appl Environ Microbiol       Date:  2009-11-30       Impact factor: 4.792

9.  Degradation of polycyclic aromatic hydrocarbons in soil by a tolerant strain of Trichoderma asperellum.

Authors:  German Zafra; Angélica Moreno-Montaño; Ángel E Absalón; Diana V Cortés-Espinosa
Journal:  Environ Sci Pollut Res Int       Date:  2014-08-10       Impact factor: 4.223

10.  QIIME allows analysis of high-throughput community sequencing data.

Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

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  3 in total

1.  Bioremediation of Dichlorodiphenyltrichloroethane (DDT)-Contaminated Agricultural Soils: Potential of Two Autochthonous Saprotrophic Fungal Strains.

Authors:  Fabiana Russo; Andrea Ceci; Flavia Pinzari; Antonietta Siciliano; Marco Guida; Eligio Malusà; Małgorzata Tartanus; Artur Miszczak; Oriana Maggi; Anna Maria Persiani
Journal:  Appl Environ Microbiol       Date:  2019-10-16       Impact factor: 4.792

2.  Investigating the mycobiome of the Holcomb Creosote Superfund Site.

Authors:  Lauren M Czaplicki; Lauren K Redfern; Ellen M Cooper; P Lee Ferguson; Rytas Vilgalys; Claudia K Gunsch
Journal:  Chemosphere       Date:  2020-03-17       Impact factor: 7.086

3.  Evaluating the mycostimulation potential of select carbon amendments for the degradation of a model PAH by an ascomycete strain enriched from a superfund site.

Authors:  Lauren M Czaplicki; Monika Dharia; Ellen M Cooper; P Lee Ferguson; Claudia K Gunsch
Journal:  Biodegradation       Date:  2018-07-13       Impact factor: 3.909

  3 in total

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