| Literature DB >> 27916959 |
Juan Frau1, Francisco Muñoz2, Daniel Glossman-Mitnik3,4.
Abstract
The chemical reactivity of resveratrol isomers with the potential to play a role as inhibitors of the nonenzymatic glycation of amino acids and proteins, both acting as antioxidants and as chelating agents for metallic ions such as Cu, Al and Fe, have been studied by resorting to the latest family of Minnesota density functionals. The chemical reactivity descriptors have been calculated through Molecular Electron Density Theory encompassing Conceptual DFT. The active sites for nucleophilic and electrophilic attacks have been chosen by relating them to the Fukui function indices, the dual descriptor f ( 2 ) ( r ) and the electrophilic and nucleophilic Parr functions. The validity of "Koopmans' theorem in DFT" has been assessed by means of a comparison between the descriptors calculated through vertical energy values and those arising from the HOMO and LUMO values.Entities:
Keywords: cis-Resveratrol; computational chemistry; conceptual DFT; molecular electron density theory; molecular modeling; trans-Resveratrol
Mesh:
Substances:
Year: 2016 PMID: 27916959 PMCID: PMC6274544 DOI: 10.3390/molecules21121650
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Molecular structures of (a) cis-resveratrol; and (b) trans-resveratrol.
HOMO (Higher Occupied Molecular Orbital) and LUMO (Lower Unoccupied Molecular Orbital) energies (in eV), ionization potentials I and electron affinities A (in eV), and global electronegativity χ, total hardness η, global electrophilicity ω, electroaccepting power (), and net electrophilicity of cis-resveratrol calculated with the M11, M11L, MN12L, MN12SX, N12, N12SX, SOGGA11 and SOGGA11X density functionals and the Def2TZVP basis set using water as a solvent simulated with the SMD (Solvent Model Density) parametrization of the IEF-PCM model (Integral Equation Formalism-Polarized Continuum Model). The upper part of the table shows the results derived assuming the validity of Koopmans’ theorem and the lower part shows the results derived from the calculated vertical I and A.
| M11 | −8.153 | 0.692 | 3.731 | 8.845 | 0.787 | 3.992 | 0.261 | 4.252 |
| M11L | −5.247 | −2.088 | 3.667 | 3.159 | 2.129 | 6.289 | 2.622 | 8.910 |
| MN12L | −5.016 | −1.663 | 3.339 | 3.354 | 1.663 | 5.205 | 1.865 | 7.070 |
| MN12SX | −5.589 | −1.578 | 3.584 | 4.011 | 1.601 | 5.245 | 1.661 | 6.905 |
| N12 | −4.720 | −1.882 | 3.301 | 2.838 | 1.920 | 5.667 | 2.366 | 8.034 |
| N12SX | −5.414 | −1.538 | 3.476 | 3.876 | 1.559 | 5.097 | 1.622 | 6.719 |
| SOGGA11 | −5.023 | −2.203 | 3.613 | 2.820 | 2.314 | 6.611 | 2.998 | 9.609 |
| SOGGA11X | −6.445 | −0.712 | 3.578 | 5.733 | 1.117 | 4.381 | 0.802 | 5.183 |
| M11 | 6.030 | 1.421 | 3.725 | 4.608 | 1.506 | 5.162 | 1.437 | 6.599 |
| M11L | 5.502 | 1.834 | 3.668 | 3.668 | 1.834 | 5.732 | 2.064 | 7.795 |
| MN12L | 5.258 | 1.455 | 3.356 | 3.804 | 1.481 | 4.878 | 1.521 | 6.399 |
| MN12SX | 5.611 | 1.595 | 3.603 | 4.016 | 1.616 | 5.285 | 1.682 | 6.967 |
| N12 | 5.025 | 1.562 | 3.294 | 3.462 | 1.566 | 4.996 | 1.703 | 6.699 |
| N12SX | 5.422 | 1.571 | 3.496 | 3.851 | 1.587 | 5.163 | 1.667 | 6.830 |
| SOGGA11 | 5.323 | 1.887 | 3.605 | 3.436 | 1.891 | 5.799 | 2.194 | 7.993 |
| SOGGA11X | 5.688 | 1.512 | 3.600 | 4.176 | 1.552 | 5.165 | 1.565 | 6.730 |
HOMO and LUMO orbital energies (in eV), ionization potentials I and electron affinities A (in eV), and global electronegativity χ, total hardness η, global electrophilicity ω, electroaccepting power (), and net electrophilicity of trans-resveratrol calculated with the M11, M11L, MN12L, MN12SX, N12, N12SX, SOGGA11 and SOGGA11X density functionals and the Def2TZVP basis set using water as a solvent simulated with the SMD parametrization of the IEF-PCM model. The upper part of the table shows the results derived assuming the validity of Koopmans’ theorem and the lower part shows the results derived from the calculated vertical I and A.
| M11 | −7.885 | 0.274 | 3.806 | 8.160 | 0.887 | 4.188 | 0.382 | 4.570 |
| M11L | −5.116 | −2.273 | 3.695 | 2.844 | 2.400 | 6.825 | 3.131 | 9.956 |
| MN12L | −4.882 | −1.848 | 3.365 | 3.034 | 1.867 | 5.605 | 2.240 | 7.846 |
| MN12SX | −5.416 | −1.819 | 3.617 | 3.597 | 1.819 | 5.672 | 2.054 | 7.726 |
| N12 | −4.614 | −1.976 | 3.295 | 2.638 | 2.057 | 5.927 | 2.632 | 8.559 |
| N12SX | −5.257 | −1.733 | 3.495 | 3.524 | 1.733 | 5.435 | 1.940 | 7.374 |
| SOGGA11 | −4.919 | −2.307 | 3.613 | 2.612 | 2.498 | 6.966 | 3.354 | 10.320 |
| SOGGA11X | −6.234 | 0.980 | 3.607 | 5.253 | 1.238 | 4.608 | 1.001 | 5.609 |
| M11 | 5.837 | 1.806 | 3.822 | 4.031 | 1.811 | 5.786 | 1.964 | 7.750 |
| M11L | 5.363 | 2.033 | 3.698 | 3.330 | 2.053 | 6.163 | 2.465 | 8.628 |
| MN12L | 5.114 | 1.651 | 3.383 | 3.462 | 1.652 | 5.212 | 1.830 | 7.042 |
| MN12SX | 5.434 | 1.838 | 3.636 | 3.596 | 1.838 | 5.718 | 2.083 | 7.801 |
| N12 | 4.911 | 1.665 | 3.288 | 3.246 | 1.666 | 5.178 | 1.890 | 7.068 |
| N12SX | 5.259 | 1.769 | 3.514 | 3.490 | 1.769 | 5.514 | 1.999 | 7.513 |
| SOGGA11 | 5.220 | 1.993 | 3.606 | 3.227 | 2.015 | 6.035 | 2.428 | 8.463 |
| SOGGA11X | 5.491 | 1.771 | 3.631 | 3.719 | 1.772 | 5.593 | 1.962 | 7.554 |
Descriptors , , , , , , , , , and for the cis-resveratrol molecule calculated from the results of Table 1.
| Descriptor | M11 | M11L | MN12L | MN12SX | N12 | N12SX | SOGGA11 | SOGGA11X |
|---|---|---|---|---|---|---|---|---|
| 2.124 | 0.255 | 0.242 | 0.021 | 0.305 | 0.008 | 0.300 | 0.757 | |
| 2.113 | 0.254 | 0.208 | 0.017 | 0.320 | 0.033 | 0.316 | 0.801 | |
| 2.996 | 0.360 | 0.319 | 0.027 | 0.441 | 0.034 | 0.436 | 1.102 | |
| 0.005 | 0.001 | 0.017 | 0.019 | 0.008 | 0.020 | 0.008 | 0.022 | |
| 4.237 | 0.509 | 0.450 | 0.005 | 0.624 | 0.025 | 0.616 | 1.557 | |
| 0.719 | 0.295 | 0.182 | 0.015 | 0.353 | 0.028 | 0.423 | 0.435 | |
| 4.297 | 0.588 | 0.486 | 0.025 | 0.717 | 0.043 | 0.748 | 1.617 | |
| 1.171 | 0.557 | 0.327 | 0.040 | 0.671 | 0.066 | 0.812 | 0.784 | |
| 1.176 | 2.558 | 0.344 | 0.021 | 0.664 | 0.045 | 0.804 | 0.762 | |
| 2.347 | 1.115 | 0.671 | 0.062 | 1.335 | 0.111 | 1.617 | 1.546 | |
| 2.874 | 1.366 | 0.822 | 0.077 | 1.635 | 0.136 | 1.980 | 1.894 |
Descriptors , , , , , , , , , and for the trans-resveratrol molecule calculated from the results of Table 2.
| Descriptor | M11 | M11L | MN12L | MN12SX | N12 | N12SX | SOGGA11 | SOGGA11X |
|---|---|---|---|---|---|---|---|---|
| 2.048 | 0.247 | 0.232 | 0.018 | 0.297 | 0.002 | 0.301 | 0.743 | |
| 2.080 | 0.240 | 0.197 | 0.019 | 0.310 | 0.036 | 0.314 | 0.791 | |
| 2.919 | 0.344 | 0.304 | 0.026 | 0.430 | 0.036 | 0.435 | 1.085 | |
| 0.016 | 0.003 | 0.017 | 0.018 | 0.006 | 0.019 | 0.009 | 0.024 | |
| 4.128 | 0.487 | 0.429 | 0.000 | 0.608 | 0.034 | 0.615 | 1.534 | |
| 0.924 | 0.347 | 0.214 | 0.019 | 0.392 | 0.036 | 0.483 | 0.534 | |
| 4.231 | 0.598 | 0.480 | 0.026 | 0.723 | 0.053 | 0.782 | 1.625 | |
| 1.598 | 0.662 | 0.393 | 0.047 | 0.749 | 0.079 | 0.932 | 0.984 | |
| 1.582 | 0.666 | 0.411 | 0.028 | 0.742 | 0.060 | 0.925 | 0.960 | |
| 3.180 | 1.328 | 0.804 | 0.075 | 1.491 | 0.139 | 1.857 | 1.945 | |
| 2.874 | 1.366 | 0.822 | 0.077 | 1.635 | 0.136 | 1.980 | 1.894 |
Condensed dual descriptor over the atoms of the cis-resveratrol molecule calculated with the M11, M11L, MN12L, MN12SX, N12, N12SX, SOGGA11 and SOGGA11X density functionals and the Def2TZVP basis set using water as a solvent simulated with the SMD parametrization of the IEF-PCM model. The actual values have been multiplied by 100 for an easier comparison. H atoms are not shown.
| Atom | M11 | M11L | MN12L | MN12SX | N12 | N12SX | SOGGA11 | SOGGA11X |
|---|---|---|---|---|---|---|---|---|
| 1O | −1.01 | −0.96 | −0.91 | −0.77 | −0.47 | −0.56 | −0.20 | −0.58 |
| 2O | 0.15 | 0.09 | 0.10 | 0.07 | −0.05 | 0.05 | −0.33 | 0.07 |
| 3O | −6.05 | −5.34 | −5.69 | −5.23 | −5.48 | −5.28 | −6.30 | −5.07 |
| 4C | 4.99 | 3.74 | 4.37 | 4.39 | 3.64 | 4.15 | 3.56 | 4.62 |
| 5C | −9.39 | −8.90 | −8.34 | −8.76 | −6.67 | −7.72 | −6.86 | −8.67 |
| 6C | 3.19 | 2.46 | 1.75 | 1.76 | 0.38 | 0.88 | 0.21 | 1.53 |
| 7C | 8.48 | 10.53 | 9.62 | 8.87 | 7.61 | 7.84 | 7.92 | 7.97 |
| 8C | −0.95 | −0.67 | −0.47 | −0.24 | 1.07 | 0.89 | 3.10 | 0.81 |
| 9C | 4.40 | 4.66 | 4.35 | 3.91 | 3.29 | 3.60 | 2.00 | 3.87 |
| 10C | 0.35 | 0.39 | 0.59 | 0.67 | 1.17 | 1.03 | 1.40 | 1.01 |
| 11C | 2.29 | 0.73 | 0.84 | 1.38 | 0.68 | 0.94 | 0.17 | 1.18 |
| 12C | 0.20 | 0.35 | 0.11 | −0.30 | 0.16 | −0.16 | 0.19 | −0.25 |
| 13C | −0.07 | 2.79 | 2.31 | 1.38 | 2.95 | 2.34 | 3.65 | 1.80 |
| 14C | 1.55 | −1.32 | −0.64 | 0.04 | −1.04 | −0.03 | −0.91 | 0.34 |
| 15C | −5.21 | −5.13 | −4.89 | −4.75 | −3.75 | −4.06 | −3.67 | −4.42 |
| 16C | −2.72 | −3.24 | −2.87 | −2.88 | −2.86 | −2.95 | −3.83 | −3.07 |
| 17C | −3.56 | −2.19 | −2.28 | −2.93 | −1.38 | −2.18 | −0.98 | −2.84 |
Condensed dual descriptor over the atoms of the trans-resveratrol molecule calculated with the M11, M11L, MN12L, MN12SX, N12, N12SX, SOGGA11 and SOGGA11X density functionals and the Def2TZVP basis set using water as a solvent simulated with the SMD parametrization of the IEF-PCM model. The actual values have been multiplied by 100 for an easier comparison. H atoms are not shown.
| Atom | M11 | M11L | MN12L | MN12SX | N12 | N12SX | SOGGA11 | SOGGA11X |
|---|---|---|---|---|---|---|---|---|
| 1O | −0.08 | −0.19 | −0.17 | −0.10 | −0.23 | −0.10 | −0.18 | −0.07 |
| 2O | −0.26 | −0.23 | −0.22 | −0.22 | −0.21 | −0.21 | −0.31 | −0.20 |
| 3O | −4.63 | −4.31 | −4.65 | −4.17 | −4.75 | −4.32 | −5.44 | −4.01 |
| 4C | 4.39 | 3.30 | 3.57 | 3.63 | 2.93 | 3.55 | 2.93 | 4.01 |
| 5C | −6.55 | −5.92 | −5.65 | −5.99 | −4.86 | −5.47 | −5.34 | −5.98 |
| 6C | 0.63 | 0.74 | 0.21 | 0.33 | 0.23 | 0.02 | 0.73 | 0.04 |
| 7C | 7.89 | 9.90 | 9.13 | 8.69 | 7.95 | 7.86 | 8.84 | 7.97 |
| 8C | 2.48 | 1.00 | 1.17 | 1.72 | 1.17 | 1.65 | 1.76 | 1.83 |
| 9C | 0.67 | 1.07 | 1.02 | 0.67 | 1.33 | 0.85 | 1.09 | 0.64 |
| 10C | 1.81 | 1.25 | 1.33 | 1.54 | 1.20 | 1.50 | 1.43 | 1.72 |
| 11C | 0.28 | 0.11 | 0.17 | 0.15 | 0.19 | 0.24 | 0.03 | 0.29 |
| 12C | −0.79 | −0.52 | −0.47 | −0.83 | −0.37 | −0.67 | −0.70 | −0.86 |
| 13C | 3.06 | 4.66 | 4.26 | 3.93 | 4.02 | 3.60 | 4.14 | 3.45 |
| 14C | −1.05 | −3.92 | −3.10 | −2.38 | −2.77 | −2.10 | −2.72 | −1.92 |
| 15C | −2.72 | −3.25 | −3.03 | −2.78 | −2.78 | −2.66 | −2.92 | −2.68 |
| 16C | −3.24 | −2.88 | −2.71 | −2.85 | −2.57 | −2.68 | −2.95 | −2.83 |
| 17C | −2.12 | −1.11 | −1.13 | −1.63 | −0.71 | −1.30 | −0.70 | −1.63 |
Electrophilic and nucleophilic Parr functions over the atoms of the cis-resveratrol molecule calculated with the MN12SX and N12SX density functionals and the Def2TZVP basis set using water as a solvent simulated with the SMD parametrization of the IEF-PCM model. ASDs come from Hirshfeld and MBS population analysis. The actual values have been multiplied by 100 for an easier comparison. H atoms are not shown.
| MN12SX | N12SX | |||||||
|---|---|---|---|---|---|---|---|---|
| Hirshfeld | MBS | Hirshfeld | MBS | |||||
| Atom | ||||||||
| 1O | 3.70 | 0.92 | 0.08 | 0.98 | 0.18 | 0.42 | −0.06 | 0.50 |
| 2O | 1.92 | −0.49 | −0.08 | −0.45 | −0.06 | −0.72 | −0.25 | −0.64 |
| 3O | 2.36 | 8.44 | 1.65 | 8.68 | 2.74 | 8.34 | 1.87 | 8.42 |
| 4C | 9.42 | 3.85 | 9.81 | 1.55 | 8.88 | 3.41 | 8.70 | 0.31 |
| 5C | 16.74 | 16.12 | 17.60 | 19.41 | 16.28 | 18.08 | 17.21 | 22.07 |
| 6C | 4.80 | 13.04 | 1.68 | 16.95 | 4.33 | 12.52 | 0.43 | 16.24 |
| 7C | 19.46 | 8.83 | 23.07 | 6.05 | 19.12 | 8.65 | 22.72 | 5.45 |
| 8C | 6.50 | 8.45 | 7.15 | 11.05 | 7.09 | 8.49 | 8.27 | 11.44 |
| 9C | 6.93 | 1.76 | 6.74 | 1.89 | 7.14 | 3.06 | 7.32 | 3.96 |
| 10C | 2.15 | 1.22 | −0.11 | −0.71 | 1.63 | 0.23 | −1.05 | −2.59 |
| 11C | 1.19 | −0.38 | −1.60 | −4.04 | 0.44 | −1.16 | −2.92 | −5.44 |
| 12C | 6.26 | 4.22 | 7.24 | 2.64 | 6.84 | 4.33 | 8.43 | 3.10 |
| 13C | 7.63 | 4.94 | 10.05 | 4.03 | 9.31 | 5.01 | 12.76 | 4.31 |
| 14C | 8.60 | 10.20 | 11.73 | 13.51 | 9.39 | 11.56 | 13.03 | 15.71 |
| 15C | −0.16 | 5.27 | −3.37 | 4.39 | −1.15 | 4.27 | −5.13 | 2.91 |
| 16C | −0.42 | 2.40 | −4.33 | 0.57 | −1.66 | 1.93 | −6.62 | −0.22 |
| 17C | 7.98 | 11.22 | 12.68 | 13.51 | 9.50 | 11.60 | 15.29 | 14.48 |
Electrophilic and nucleophilic Parr functions over the atoms of the trans-resveratrol molecule calculated with the MN12SX and N12SX density functionals and the Def2TZVP basis set using water as a solvent simulated with the SMD parametrization of the IEF-PCM model. ASDs come from Hirshfeld and MBS population analysis. The actual values have been multiplied by 100 for an easier comparison. H atoms are not shown.
| MN12SX | N12SX | |||||||
|---|---|---|---|---|---|---|---|---|
| Hirshfeld | MBS | Hirshfeld | MBS | |||||
| Atom | ||||||||
| 1O | 0.37 | −0.06 | 0.09 | −0.01 | 0.16 | −0.36 | −0.07 | −0.25 |
| 2O | −0.07 | −0.28 | −0.24 | −0.22 | −0.29 | −0.64 | −0.39 | −0.54 |
| 3O | 2.65 | 7.49 | 1.89 | 7.59 | 3.00 | 7.52 | 2.09 | 7.48 |
| 4C | 8.06 | 3.43 | 7.23 | 0.09 | 7.66 | 2.86 | 6.44 | −1.31 |
| 5C | 15.57 | 17.01 | 16.01 | 20.54 | 15.11 | 17.73 | 10.31 | 21.68 |
| 6C | 4.26 | 9.91 | −0.28 | 11.69 | 3.52 | 9.60 | −1.78 | 11.19 |
| 7C | 20.27 | 9.81 | 24.09 | 8.05 | 20.14 | 9.54 | 24.17 | 7.58 |
| 8C | 7.09 | 6.89 | 9.17 | 9.15 | 7.82 | 8.13 | 8.27 | 11.16 |
| 9C | 6.44 | 5.66 | 6.54 | 7.63 | 6.91 | 6.44 | 7.43 | 9.00 |
| 10C | 2.23 | 0.06 | −0.05 | −3.71 | 1.63 | −0.84 | −1.21 | −5.44 |
| 11C | 0.63 | −0.17 | −2.65 | −4.23 | −0.05 | −1.15 | −3.97 | −6.15 |
| 12C | 5.30 | 4.76 | 6.38 | 4.35 | 6.37 | 4.93 | 8.25 | 4.80 |
| 13C | 10.23 | 5,47 | 14.37 | 5.36 | 11.27 | 5.77 | 16.16 | 5.99 |
| 14C | 8.91 | 13.75 | 12.21 | 18.45 | 9.94 | 15.21 | 13.38 | 20.82 |
| 15C | 0.27 | 3.15 | 3.42 | 1.52 | −1.45 | 2.44 | −5.52 | 0.39 |
| 16C | −0.38 | 2.42 | −5.01 | 0.41 | −1.80 | 1.62 | −7.39 | −0.86 |
| 17C | 8.71 | 10.71 | 13.68 | 13.35 | 10.08 | 11.19 | 16.15 | 14.45 |