| Literature DB >> 29765937 |
Juan Frau1, Daniel Glossman-Mitnik1,2.
Abstract
This computational study assessed eight fixed RSH (range-separated hybrid) density functionals that include CAM-B3LYP, LC-ωPBE, M11, MN12SX, N12SX, ωB97, ωB97X, and ωB97XD related to the Def2TZVP basis sets together with the SMD solvation model in the calculation the molecular structure and reactivity properties of the BISARG intermediate melanoidin pigment (5-(2-(E)-(Z)-5-[(2-furyl)methylidene]-3-(4-acetylamino-4-carboxybutyl)-2-imino-1,3-dihydroimidazol-4-ylideneamino(E)-4-[(2-furyl)methylidene]-5-oxo-1H-imidazol-1-yl)-2-acetylaminovaleric acid) and its protonated derivative, BISARG(p). The chemical reactivity descriptors for the systems were calculated via the Conceptual Density Functional Theory. The choice of active sites applicable to nucleophilic, electrophilic as well as radical attacks were made by linking them with Fukui functions indices, electrophilic and nucleophilic Parr functions, and the condensed Dual Descriptor Δf(r). The study found the MN12SX and N12SX density functionals to be the most appropriate in predicting the chemical reactivity of the molecular systems under study starting from the knowledge of the HOMO, LUMO, and HOMO-LUMO gap energies.Entities:
Keywords: BISARG; Parr functions; chemical reactivity; conceptual DFT; dual descriptor
Year: 2018 PMID: 29765937 PMCID: PMC5938602 DOI: 10.3389/fchem.2018.00136
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.221
Electronic energies of the neutral, positive and negative molecular systems (in au) of the BISARG molecule, the HOMO, LUMO, and SOMO orbital energies (in eV), J, J, J, and ΔSL descriptors (also in eV) calculated with the eight RSH density functionals and the Def2TZVP basis set using water as solvent simulated with the SMD parametrization of the IEF-PCM model.
| CAM-B3LYP | −2276.0764 | −2275.8795 | −2276.1832 | −6.6124 | −1.6898 | −4.1310 | 1.2522 | 1.2168 | 1.7458 | 2.4412 |
| LC-ωBPE | −2275.6818 | −2275.4754 | −2275.7958 | −7.8736 | −0.9566 | −5.2792 | 2.2572 | 2.1454 | 3.1139 | 4.3226 |
| M11 | −2275.9123 | −2275.7056 | −2276.0238 | −7.6575 | −1.1204 | −4.9627 | 2.0321 | 1.9146 | 2.7920 | 3.8422 |
| MN12SX | −2275.1376 | −2274.9395 | −2275.2504 | −5.3883 | −3.0639 | −3.0873 | 0.0022 | 0.0082 | 0.0084 | 0.0144 |
| N12SX | −2276.0990 | −2275.9088 | −2276.2081 | −5.1959 | −2.9278 | −3.0064 | 0.0218 | 0.0433 | 0.0484 | 0.0787 |
| ωB97 | −2276.7888 | −2276.5871 | −2276.8951 | −7.7315 | −0.7982 | −5.0476 | 2.2420 | 2.0947 | 3.0685 | 4.2494 |
| ωB97X | −2276.5890 | −2276.3879 | −2276.6957 | −7.5543 | −0.9354 | −4.9069 | 2.0819 | 1.9682 | 2.8652 | 3.9715 |
| ωB97XD | −2276.4388 | −2276.2394 | −2276.5463 | −7.2139 | −1.1972 | −4.6660 | 1.7858 | 1.7271 | 2.4842 | 3.4688 |
Electronic energies of the neutral, positive and negative molecular systems (in au) of the protonated BISARG(p) molecule, the HOMO, LUMO, and SOMO orbital energies (in eV), J, J, J, and ΔSL descriptors (also in eV) calculated with the eight RSH density functionals and the Def2TZVP basis set using water as solvent simulated with the SMD parametrization of the IEF-PCM model.
| CAM-B3LYP | −2276.5424 | −2276.3458 | −2276.6659 | −6.6364 | −2.0844 | −4.6328 | 1.2862 | 1.2775 | 1.8128 | 2.5484 |
| LC-ωBPE | −2276.1485 | −2275.9438 | −2276.2828 | −7.8698 | −1.3822 | −5.8926 | 2.2969 | 2.2703 | 3.2296 | 4.5103 |
| M11 | −2276.3780 | −2276.1724 | −2276.5077 | −7.6670 | −1.5308 | −5.5304 | 2.0719 | 2.0011 | 2.8804 | 3.9995 |
| MN12SX | −2275.6003 | −2275.4000 | −2275.7267 | −5.4495 | −3.4299 | −3.4481 | 0.0014 | 0.0114 | 0.0114 | 0.0182 |
| N12SX | −2276.5694 | −2276.3768 | −2276.6925 | −5.2653 | −3.2944 | −3.3910 | 0.0237 | 0.0558 | 0.0604 | 0.0966 |
| ωB97 | −2277.2550 | −2277.0549 | −2277.3813 | −7.7220 | −1.2241 | −5.6655 | 2.2784 | 2.2150 | 3.1776 | 4.4314 |
| ωB97X | −2277.0557 | −2276.8559 | −2277.1814 | −7.5546 | −1.3488 | −5.4980 | 2.1179 | 2.0727 | 2.9634 | 4.1492 |
| ωB97XD | −2276.9093 | −2276.7104 | −2277.0339 | −7.2329 | −1.5926 | −5.1894 | 1.8210 | 1.7976 | 2.5588 | 3.5967 |
Jχ, Jη, Jω, and J (in eV) of the BISARG intermediate melanoidin pigment.
| CAM-B3LYP | 0.0185 | 2.4706 | 1.7322 | 3.0174 |
| LC-ωBPE | 0.0552 | 4.4023 | 2.3704 | 5.0002 |
| M11 | 0.0591 | 3.9462 | 2.1447 | 4.4917 |
| MN12SX | 0.0045 | 0.0030 | 0.0131 | 0.0142 |
| N12SX | 0.0109 | 0.0610 | 0.1205 | 0.1355 |
| ωB97 | 0.0738 | 4.3370 | 2.0710 | 4.8067 |
| ωB97X | 0.0565 | 4.0499 | 2.0530 | 4.5409 |
| ωB97XD | 0.0294 | 3.5156 | 2.0168 | 4.0531 |
Jχ, Jη, Jω, and J (in eV) of the protonated BISARG(p) intermediate melanoidin pigment.
| CAM-B3LYP | 0.0046 | 2.5626 | 2.6800 | 3.7080 |
| LC-ωBPE | 0.0131 | 4.5716 | 3.9039 | 6.0117 |
| M11 | 0.0363 | 4.0705 | 3.3156 | 5.2501 |
| MN12SX | 0.0059 | 0.0084 | 0.0334 | 0.0349 |
| N12SX | 0.0161 | 0.0795 | 0.2316 | 0.2454 |
| ωB97 | 0.0316 | 4.4894 | 3.3713 | 5.6144 |
| ωB97X | 0.0225 | 4.1892 | 3.2674 | 5.3128 |
| ωB97XD | 0.0107 | 3.6182 | 3.0654 | 4.7422 |
Global reactivity descriptors for the BISARG intermediate melanoidin pigment and its protonated derivative BISARGd(p) calculated with the MN12SX density functional.
| BISARG | 4.2253 | 2.3240 | 3.8410 |
| BISARG(p) | 4.4389 | 2.0193 | 4.8790 |
| BISARG | 5.8449 | 4.4318 | 10.2767 |
| BISARG(p) | 7.1172 | 5.6637 | 12.7809 |
Figure 1A graphical schematic representation of the radical Fukui function f0 over the atomic sites of the BISARG intermediate melanoidin pigment.
Figure 2A graphical schematic representation of the radical Fukui function f0 over the atomic sites of the protonated BISARG(p) intermediate melanoidin pigment.
The condensed dual descriptor calculated with Mulliken atomic charges Δf (M), and with NPA atomic charges Δf (N), the electrophilic and nucleophilic Parr functions with Mulliken atomic spin densities (M) and (M), and the electrophilic and nucleophilic Parr functions with Hirshfeld (or CM5) atomic spin densities (H) and (H) for the BISARG melanoidin molecule. Hydrogens and atomic sites where the absolute value of the dual descriptor is lower than 1 are not shown.
| 1N | 1.95 | 0.17 | 0.0265 | 0.0052 | 0.0355 | 0.0013 |
| 2C | 12.26 | 9.75 | 0.2046 | −0.0477 | 0.1282 | −0.0128 |
| 3C | −2.86 | −3.50 | −0.0495 | 0.0454 | 0.0107 | 0.0382 |
| 4N | −4.84 | −3.07 | −0.0093 | 0.0664 | −0.0078 | 0.0502 |
| 6N | −4.90 | −4.93 | −0.0386 | 0.1255 | −0.0014 | 0.0842 |
| 7C | 4.31 | 3.52 | 0.0990 | −0.0287 | 0.0724 | 0.0118 |
| 8N | −7.69 | −5.30 | 0.0121 | 0.1827 | 0.0144 | 0.1373 |
| 10C | 3.75 | 3.52 | 0.0606 | −0.0093 | 0.0446 | 0.0055 |
| 11C | −4.19 | −3.69 | −0.0307 | 0.0601 | 0.0164 | 0.0672 |
| 13C | 3.64 | 3.40 | 0.1828 | 0.0879 | 0.1057 | 0.0693 |
| 15C | −3.10 | −0.39 | −0.0496 | 0.0160 | −0.0010 | 0.0274 |
| 18C | −1.20 | −0.94 | −0.0285 | −0.0154 | −0.0028 | 0.0082 |
| 20C | −2.43 | −1.71 | 0.0724 | 0.1095 | 0.0502 | 0.0801 |
| 23C | 8.06 | 7.25 | 0.2653 | 0.0842 | 0.1563 | 0.0720 |
| 25C | −3.21 | −1.99 | 0.1020 | 0.1482 | 0.0709 | 0.1094 |
| 26C | −1.89 | −1.47 | −0.0388 | −0.0136 | −0.0033 | 0.0150 |
| 31C | −4.63 | −0.94 | −0.0663 | 0.0355 | 0.0001 | 0.0422 |
| 32O | 1.16 | 1.07 | 0.0184 | −0.0118 | 0.0194 | 0.0009 |
| 79N | 2.58 | 1.75 | 0.0473 | −0.0153 | 0.0355 | −0.0113 |
| 81C | 1.28 | 0.19 | 0.0000 | −0.0043 | 0.0127 | 0.0010 |
The condensed dual descriptor calculated with Mulliken atomic charges Δf (M), and with NPA atomic charges Δf (N), the electrophilic and nucleophilic Parr functions with Mulliken atomic spin densities (M) and (M), and the electrophilic and nucleophilic Parr functions with Hirshfeld (or CM5) atomic spin densities (H) and (H) for the BISARG(p) melanoidin molecule. Hydrogens and atomic sites where the absolute value of the dual descriptor is lower than 1 are not shown.
| 1N | −0.28 | −1.09 | −0.0083 | 0.0179 | 0.0158 | 0.0112 |
| 2C | 12.50 | 8.97 | 0.2317 | −0.0230 | 0.1412 | −0.0021 |
| 4C | 3.40 | 2.52 | 0.0402 | −0.0084 | 0.0341 | −0.0032 |
| 5N | 2.40 | 2.14 | 0.0260 | −0.0076 | 0.0234 | −0.0062 |
| 8N | −1.30 | −0.84 | −0.0074 | 0.0218 | −0.0056 | 0.0161 |
| 12N | −6.95 | −3.44 | 0.0425 | 0.1817 | 0.0308 | 0.1445 |
| 15C | −10.14 | −7.30 | −0.0588 | 0.1222 | −0.0089 | 0.1049 |
| 16O | −3.36 | −4.03 | 0.0136 | 0.0797 | 0.0125 | 0.0662 |
| 17C | 13.43 | 8.74 | 0.3116 | 0.0363 | 0.1795 | 0.0297 |
| 19C | −1.32 | 1.08 | −0.0883 | 0.0093 | −0.0042 | 0.0134 |
| 20C | 6.25 | 4.80 | 0.1683 | 0.0409 | 0.1008 | 0.0299 |
| 21O | 1.44 | 1.41 | 0.0184 | −0.0043 | 0.0200 | 0.0002 |
| 24C | 3.85 | 2.95 | 0.1294 | 0.0546 | 0.0900 | 0.0401 |
| 27C | 2.39 | 4.54 | 0.1996 | 0.0718 | 0.1140 | 0.0759 |
| 29C | −7.81 | −5.59 | 0.0807 | 0.1977 | 0.0566 | 0.1467 |
| 30C | −2.76 | −2.17 | −0.0284 | −0.0127 | −0.0017 | 0.0222 |
| 33C | −3.67 | −2.45 | 0.1007 | 0.1274 | 0.0610 | 0.0975 |
| 35C | −7.01 | −2.75 | −0.0547 | 0.0663 | −0.0039 | 0.0638 |
Figure 3A graphical schematic representation of the BISARG intermediate melanoidin pigment with the numbering of the most important reactive sites.
Figure 4A graphical schematic representation of the protonated BISARG(d) intermediate melanoidin pigment with the numbering of the most important reactive sites.
| Electronegativity | Parr and Yang ( | |
| Global Hardness | η = ( | Parr and Yang ( |
| Electrophilicty | Parr et al. ( | |
| Electrodonating Power | Gázquez et al. ( | |
| Electroaccepting Power | Gázquez et al. ( | |
| Net electrophilicity | Chattaraj et al. ( |
| Nucleophilic Fukui Function | Parr and Yang ( | |
| Electrophilic Fukui Function | Parr and Yang ( | |
| Dual Descriptor | Morell et al. ( | |
| Nucleophilic Parr Function | Domingo et al. ( | |
| Electrophilic Parr Function | Domingo et al. ( |
| CAM-B3LYP | Long-range-corrected B3LYP by the CAM method | Yanai et al. ( |
| LC-ωPBE | Long-range-corrected ωPBE density functional | Henderson et al. ( |
| M11 | Range-separated hybrid meta-GGA | Peverati and Truhlar ( |
| MN12SX | Range-separated hybrid nonseparable meta-NGA | Peverati and Truhlar ( |
| N12SX | Range-separated hybrid NGA | Peverati and Truhlar ( |
| ωB97 | Long-range corrected density functional | Chai and Head-Gordon ( |
| ωB97X | Long-range corrected density functional | Chai and Head-Gordon ( |
| ωB97XD | ωB97X version including empirical dispersion | Chai and Head-Gordon ( |