Literature DB >> 27914620

Gene Regulation and Speciation.

Katya L Mack1, Michael W Nachman2.   

Abstract

Understanding the genetic architecture of speciation is a major goal in evolutionary biology. Hybrid dysfunction is thought to arise most commonly through negative interactions between alleles at two or more loci. Divergence between interacting regulatory elements that affect gene expression (i.e., regulatory divergence) may be a common route for these negative interactions to arise. We review here how regulatory divergence between species can result in hybrid dysfunction, including recent theoretical support for this model. We then discuss the empirical evidence for regulatory divergence between species and evaluate evidence for misregulation as a source of hybrid dysfunction. Finally, we review unresolved questions in gene regulation as it pertains to speciation and point to areas that could benefit from future research.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  gene expression; gene regulation; hybrid inviability; hybrid sterility; speciation

Mesh:

Year:  2016        PMID: 27914620      PMCID: PMC5182078          DOI: 10.1016/j.tig.2016.11.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  120 in total

1.  Evolution of gene expression in the Drosophila melanogaster subgroup.

Authors:  Scott A Rifkin; Junhyong Kim; Kevin P White
Journal:  Nat Genet       Date:  2003-01-27       Impact factor: 38.330

2.  Evolution of branched regulatory genetic pathways: directional selection on pleiotropic loci accelerates developmental system drift.

Authors:  Norman A Johnson; Adam H Porter
Journal:  Genetica       Date:  2006-08-16       Impact factor: 1.082

3.  Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species.

Authors:  Hsin-Yi Lee; Jui-Yu Chou; Liplee Cheong; Nai-Hsin Chang; Shi-Yow Yang; Jun-Yi Leu
Journal:  Cell       Date:  2008-12-12       Impact factor: 41.582

4.  Widespread over-expression of the X chromosome in sterile F₁hybrid mice.

Authors:  Jeffrey M Good; Thomas Giger; Matthew D Dean; Michael W Nachman
Journal:  PLoS Genet       Date:  2010-09-30       Impact factor: 5.917

5.  A KRAB-related domain and a novel transcription repression domain in proteins encoded by SSX genes that are disrupted in human sarcomas.

Authors:  F L Lim; M Soulez; D Koczan; H J Thiesen; J C Knight
Journal:  Oncogene       Date:  1998-10-15       Impact factor: 9.867

6.  Limited gene misregulation is exacerbated by allele-specific upregulation in lethal hybrids between Drosophila melanogaster and Drosophila simulans.

Authors:  Kevin H-C Wei; Andrew G Clark; Daniel A Barbash
Journal:  Mol Biol Evol       Date:  2014-04-09       Impact factor: 16.240

7.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

Review 8.  Tempo and mode in evolution of transcriptional regulation.

Authors:  Kacy L Gordon; Ilya Ruvinsky
Journal:  PLoS Genet       Date:  2012-01-19       Impact factor: 5.917

9.  Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast.

Authors:  C Joel McManus; Gemma E May; Pieter Spealman; Alan Shteyman
Journal:  Genome Res       Date:  2013-12-06       Impact factor: 9.043

10.  Re-engineering the zinc fingers of PRDM9 reverses hybrid sterility in mice.

Authors:  Benjamin Davies; Edouard Hatton; Nicolas Altemose; Julie G Hussin; Florencia Pratto; Gang Zhang; Anjali Gupta Hinch; Daniela Moralli; Daniel Biggs; Rebeca Diaz; Chris Preece; Ran Li; Emmanuelle Bitoun; Kevin Brick; Catherine M Green; R Daniel Camerini-Otero; Simon R Myers; Peter Donnelly
Journal:  Nature       Date:  2016-02-03       Impact factor: 49.962

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  50 in total

1.  Genomic Structure of Hstx2 Modifier of Prdm9-Dependent Hybrid Male Sterility in Mice.

Authors:  Diana Lustyk; Slavomír Kinský; Kristian Karsten Ullrich; Michelle Yancoskie; Lenka Kašíková; Vaclav Gergelits; Radislav Sedlacek; Yingguang Frank Chan; Linda Odenthal-Hesse; Jiri Forejt; Petr Jansa
Journal:  Genetics       Date:  2019-09-27       Impact factor: 4.562

Review 2.  The importance of intrinsic postzygotic barriers throughout the speciation process.

Authors:  Jenn M Coughlan; Daniel R Matute
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-07-13       Impact factor: 6.237

Review 3.  Multi-locus interactions and the build-up of reproductive isolation.

Authors:  I Satokangas; S H Martin; H Helanterä; J Saramäki; J Kulmuni
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-07-13       Impact factor: 6.237

Review 4.  The Evolution of Gene Expression in cis and trans.

Authors:  Sarah A Signor; Sergey V Nuzhdin
Journal:  Trends Genet       Date:  2018-04-18       Impact factor: 11.639

Review 5.  Archaic hominin genomics provides a window into gene expression evolution.

Authors:  Stephanie M Yan; Rajiv C McCoy
Journal:  Curr Opin Genet Dev       Date:  2020-06-29       Impact factor: 5.578

6.  Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression.

Authors:  Rajiv C McCoy; Jon Wakefield; Joshua M Akey
Journal:  Cell       Date:  2017-02-23       Impact factor: 41.582

7.  The transcriptomic signature of obligate parthenogenesis.

Authors:  Sen Xu; Trung V Huynh; Marelize Snyman
Journal:  Heredity (Edinb)       Date:  2022-01-17       Impact factor: 3.821

8.  Hybrid breakdown is elevated near the historical cores of a species' range.

Authors:  Matthew H Koski; Laura F Galloway; Jeremiah W Busch
Journal:  Proc Biol Sci       Date:  2022-03-16       Impact factor: 5.349

9.  Hybrid Sterility with Meiotic Metaphase Arrest in Intersubspecific Mouse Crosses.

Authors:  Risako Nishino; Sabrina Petri; Mary Ann Handel; Tetsuo Kunieda; Yasuhiro Fujiwara
Journal:  J Hered       Date:  2019-03-05       Impact factor: 2.645

10.  Variation in hybrid gene expression: Implications for the evolution of genetic incompatibilities in interbreeding species.

Authors:  Fabian Seidl; Nicholas A Levis; Corbin D Jones; Anaïs Monroy-Eklund; Ian M Ehrenreich; Karin S Pfennig
Journal:  Mol Ecol       Date:  2019-10-15       Impact factor: 6.185

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