Literature DB >> 27911826

Structural insights into the LCIB protein family reveals a new group of β-carbonic anhydrases.

Shengyang Jin1, Jian Sun1, Tobias Wunder1, Desong Tang1,2, Asaph B Cousins3, Siu Kwan Sze1, Oliver Mueller-Cajar4, Yong-Gui Gao4,5.   

Abstract

Aquatic microalgae have evolved diverse CO2-concentrating mechanisms (CCMs) to saturate the carboxylase with its substrate, to compensate for the slow kinetics and competing oxygenation reaction of the key photosynthetic CO2-fixing enzyme rubisco. The limiting CO2-inducible B protein (LCIB) is known to be essential for CCM function in Chlamydomonas reinhardtii To assign a function to this previously uncharacterized protein family, we purified and characterized a phylogenetically diverse set of LCIB homologs. Three of the six homologs are functional carbonic anhydrases (CAs). We determined the crystal structures of LCIB and limiting CO2-inducible C protein (LCIC) from C. reinhardtii and a CA-functional homolog from Phaeodactylum tricornutum, all of which harbor motifs bearing close resemblance to the active site of canonical β-CAs. Our results identify the LCIB family as a previously unidentified group of β-CAs, and provide a biochemical foundation for their function in the microalgal CCMs.

Entities:  

Keywords:  CO2-concentrating mechanism; LCIB; carbonic anhydrases; limiting-CO2 inducible protein; photosynthesis

Mesh:

Substances:

Year:  2016        PMID: 27911826      PMCID: PMC5187666          DOI: 10.1073/pnas.1616294113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations.

Authors:  Jeffrey J Gray; Stewart Moughon; Chu Wang; Ora Schueler-Furman; Brian Kuhlman; Carol A Rohl; David Baker
Journal:  J Mol Biol       Date:  2003-08-01       Impact factor: 5.469

Review 2.  The physiology and genetics of CO2 concentrating mechanisms in model diatoms.

Authors:  Brian M Hopkinson; Christopher L Dupont; Yusuke Matsuda
Journal:  Curr Opin Plant Biol       Date:  2016-04-04       Impact factor: 7.834

3.  The active site architecture of Pisum sativum beta-carbonic anhydrase is a mirror image of that of alpha-carbonic anhydrases.

Authors:  M S Kimber; E F Pai
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

4.  Acclimation to very low CO2: contribution of limiting CO2 inducible proteins, LCIB and LCIA, to inorganic carbon uptake in Chlamydomonas reinhardtii.

Authors:  Yingjun Wang; Martin H Spalding
Journal:  Plant Physiol       Date:  2014-10-21       Impact factor: 8.340

5.  Expression of Human Carbonic Anhydrase in the Cyanobacterium Synechococcus PCC7942 Creates a High CO(2)-Requiring Phenotype : Evidence for a Central Role for Carboxysomes in the CO(2) Concentrating Mechanism.

Authors:  G D Price; M R Badger
Journal:  Plant Physiol       Date:  1989-10       Impact factor: 8.340

6.  Internal Inorganic Carbon Pool of Chlamydomonas reinhardtii: EVIDENCE FOR A CARBON DIOXIDE-CONCENTRATING MECHANISM.

Authors:  M R Badger; A Kaplan; J A Berry
Journal:  Plant Physiol       Date:  1980-09       Impact factor: 8.340

Review 7.  Rubisco: structure, regulatory interactions, and possibilities for a better enzyme.

Authors:  Robert J Spreitzer; Michael E Salvucci
Journal:  Annu Rev Plant Biol       Date:  2002       Impact factor: 26.379

Review 8.  Origins and diversity of eukaryotic CO2-concentrating mechanisms: lessons for the future.

Authors:  Moritz Meyer; Howard Griffiths
Journal:  J Exp Bot       Date:  2013-01       Impact factor: 6.992

9.  Knockdown of limiting-CO2-induced gene HLA3 decreases HCO3- transport and photosynthetic Ci affinity in Chlamydomonas reinhardtii.

Authors:  Deqiang Duanmu; Amy R Miller; Kempton M Horken; Donald P Weeks; Martin H Spalding
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-24       Impact factor: 11.205

10.  Rubisco small-subunit α-helices control pyrenoid formation in Chlamydomonas.

Authors:  Moritz T Meyer; Todor Genkov; Jeremy N Skepper; Juliette Jouhet; Madeline C Mitchell; Robert J Spreitzer; Howard Griffiths
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

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  20 in total

1.  Structure and function of LCI1: a plasma membrane CO2 channel in the Chlamydomonas CO2 concentrating mechanism.

Authors:  Alfredo Kono; Tsung-Han Chou; Abhijith Radhakrishnan; Jani Reddy Bolla; Kannan Sankar; Sayane Shome; Chih-Chia Su; Robert L Jernigan; Carol V Robinson; Edward W Yu; Martin H Spalding
Journal:  Plant J       Date:  2020-04-18       Impact factor: 6.417

2.  A Spatial Interactome Reveals the Protein Organization of the Algal CO2-Concentrating Mechanism.

Authors:  Luke C M Mackinder; Chris Chen; Ryan D Leib; Weronika Patena; Sean R Blum; Matthew Rodman; Silvia Ramundo; Christopher M Adams; Martin C Jonikas
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

Review 3.  Stress-Related Changes in the Expression and Activity of Plant Carbonic Anhydrases.

Authors:  O V Polishchuk
Journal:  Planta       Date:  2021-02-03       Impact factor: 4.116

4.  The Chlamydomonas bZIP transcription factor BLZ8 confers oxidative stress tolerance by inducing the carbon-concentrating mechanism.

Authors:  Bae Young Choi; Hanul Kim; Donghwan Shim; Sunghoon Jang; Yasuyo Yamaoka; Seungjun Shin; Takashi Yamano; Masataka Kajikawa; EonSeon Jin; Hideya Fukuzawa; Youngsook Lee
Journal:  Plant Cell       Date:  2022-02-03       Impact factor: 11.277

Review 5.  Emerging trends in environmental and industrial applications of marine carbonic anhydrase: a review.

Authors:  Sudabeh Iraninasab; Sana Sharifian; Ahmad Homaei; Mozafar Bagherzadeh Homaee; Tanvi Sharma; Ashok Kumar Nadda; John F Kennedy; Muhammad Bilal; Hafiz M N Iqbal
Journal:  Bioprocess Biosyst Eng       Date:  2021-11-25       Impact factor: 3.210

6.  Modelling the pyrenoid-based CO2-concentrating mechanism provides insights into its operating principles and a roadmap for its engineering into crops.

Authors:  Chenyi Fei; Alexandra T Wilson; Niall M Mangan; Ned S Wingreen; Martin C Jonikas
Journal:  Nat Plants       Date:  2022-05-19       Impact factor: 17.352

Review 7.  Prospects for Engineering Biophysical CO2 Concentrating Mechanisms into Land Plants to Enhance Yields.

Authors:  Jessica H Hennacy; Martin C Jonikas
Journal:  Annu Rev Plant Biol       Date:  2020-03-09       Impact factor: 26.379

8.  Pyrenoid Starch Sheath Is Required for LCIB Localization and the CO2-Concentrating Mechanism in Green Algae.

Authors:  Chihana Toyokawa; Takashi Yamano; Hideya Fukuzawa
Journal:  Plant Physiol       Date:  2020-02-10       Impact factor: 8.340

9.  Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts.

Authors:  Fay-Wei Li; Tomoaki Nishiyama; Manuel Waller; Eftychios Frangedakis; Jean Keller; Zheng Li; Noe Fernandez-Pozo; Michael S Barker; Tom Bennett; Miguel A Blázquez; Shifeng Cheng; Andrew C Cuming; Jan de Vries; Sophie de Vries; Pierre-Marc Delaux; Issa S Diop; C Jill Harrison; Duncan Hauser; Jorge Hernández-García; Alexander Kirbis; John C Meeks; Isabel Monte; Sumanth K Mutte; Anna Neubauer; Dietmar Quandt; Tanner Robison; Masaki Shimamura; Stefan A Rensing; Juan Carlos Villarreal; Dolf Weijers; Susann Wicke; Gane K-S Wong; Keiko Sakakibara; Péter Szövényi
Journal:  Nat Plants       Date:  2020-03-13       Impact factor: 15.793

Review 10.  The hornworts: morphology, evolution and development.

Authors:  Eftychios Frangedakis; Masaki Shimamura; Juan Carlos Villarreal; Fay-Wei Li; Marta Tomaselli; Manuel Waller; Keiko Sakakibara; Karen S Renzaglia; Péter Szövényi
Journal:  New Phytol       Date:  2020-09-15       Impact factor: 10.151

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