Literature DB >> 27909232

CORP: Minimizing the chances of false positives and false negatives.

Douglas Curran-Everett1.   

Abstract

Statistics is essential to the process of scientific discovery. An inescapable tenet of statistics, however, is the notion of uncertainty which has reared its head within the arena of reproducibility of research. The Journal of Applied Physiology's recent initiative, "Cores of Reproducibility in Physiology," is designed to improve the reproducibility of research: each article is designed to elucidate the principles and nuances of using some piece of scientific equipment or some experimental technique so that other researchers can obtain reproducible results. But other researchers can use some piece of equipment or some technique with expert skill and still fail to replicate an experimental result if they neglect to consider the fundamental concepts of statistics of hypothesis testing and estimation and their inescapable connection to the reproducibility of research. If we want to improve the reproducibility of our research, then we want to minimize the chance that we get a false positive and-at the same time-we want to minimize the chance that we get a false negative. In this review I outline strategies to accomplish each of these things. These strategies are related intimately to fundamental concepts of statistics and the inherent uncertainty embedded in them.
Copyright © 2017 the American Physiological Society.

Keywords:  estimation; hypothesis test; power; reproducibility; significance test

Mesh:

Year:  2016        PMID: 27909232     DOI: 10.1152/japplphysiol.00937.2016

Source DB:  PubMed          Journal:  J Appl Physiol (1985)        ISSN: 0161-7567


  11 in total

1.  Statistical considerations in reporting cardiovascular research.

Authors:  Merry L Lindsey; Gillian A Gray; Susan K Wood; Douglas Curran-Everett
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-07-20       Impact factor: 4.733

2.  Automated full-range pressure-volume curves in mice and rats.

Authors:  Annette Robichaud; Liah Fereydoonzad; Nathachit Limjunyawong; Richard Rabold; Benoit Allard; Andrea Benedetti; James G Martin; Wayne Mitzner
Journal:  J Appl Physiol (1985)       Date:  2017-07-27

Review 3.  Basic statistical considerations for physiology: The journal Temperature toolbox.

Authors:  Aaron R Caldwell; Samuel N Cheuvront
Journal:  Temperature (Austin)       Date:  2019-06-25

4.  Transitional human alveolar type II epithelial cells suppress extracellular matrix and growth factor gene expression in lung fibroblasts.

Authors:  Kelly A Correll; Karen E Edeen; Rachel L Zemans; Elizabeth F Redente; Karina A Serban; Douglas Curran-Everett; Benjamin L Edelman; Amanda Mikels-Vigdal; Robert J Mason
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2019-06-05       Impact factor: 5.464

5.  Performance metric curve analysis framework to assess impact of the decision variable threshold, disease prevalence, and dataset variability in two-class classification.

Authors:  Heather M Whitney; Karen Drukker; Maryellen L Giger
Journal:  J Med Imaging (Bellingham)       Date:  2022-05-31

6.  Judgements of hand location and hand spacing show minimal proprioceptive drift.

Authors:  Alex Rana; Annie A Butler; Simon C Gandevia; Martin E Héroux
Journal:  Exp Brain Res       Date:  2020-05-27       Impact factor: 1.972

7.  Longitudinal wall fractional shortening: an M-mode index based on mitral annular plane systolic excursion (MAPSE) that correlates and predicts left ventricular longitudinal strain (LVLS) in intensive care patients.

Authors:  Stephen J Huang; Iris Ting; Andrea M Huang; Michel Slama; Anthony S McLean
Journal:  Crit Care       Date:  2017-11-25       Impact factor: 9.097

8.  Questionable science and reproducibility in electrical brain stimulation research.

Authors:  Martin E Héroux; Colleen K Loo; Janet L Taylor; Simon C Gandevia
Journal:  PLoS One       Date:  2017-04-26       Impact factor: 3.240

9.  TGF beta inhibits HGF, FGF7, and FGF10 expression in normal and IPF lung fibroblasts.

Authors:  Kelly A Correll; Karen E Edeen; Elizabeth F Redente; Rachel L Zemans; Benjamin L Edelman; Thomas Danhorn; Douglas Curran-Everett; Amanda Mikels-Vigdal; Robert J Mason
Journal:  Physiol Rep       Date:  2018-08

10.  Sample Adequacy Control (SAC) Lowers False Negatives and Increases the Quality of Screening: Introduction of "Non-Competitive" SAC for qPCR Assays.

Authors:  Ivan Brukner; Alex Resendes; Shaun Eintracht; Andreas I Papadakis; Matthew Oughton
Journal:  Diagnostics (Basel)       Date:  2021-06-22
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