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Literature DB >> 27900587

Phylogenetic analysis of Wheat dwarf virus isolates from Iran.

Mohamad Hamed Ghodoum Parizipour¹, Jörg Schubert², Seyed Ali Akbar Behjatnia¹, Alireza Afsharifar¹, Antje Habekuß³, Beilei Wu⁴.

Abstract

Wheat dwarf virus (WDV) adversely affects cereal production in Asia, Europe, and North Africa. In this study, sequences of several WDV isolates from Iran which is located in the Fertile Crescent were analyzed. Analysis revealed a new geographic cluster for WDV-Wheat from Iran. Recombination analysis demonstrated the existence of several breakpoints in different regions of the viral genome. Data analysis demonstrated that WDV-Barley has an older history and lower diversity than WDV-Wheat. Sequence analysis identified a rare occasion of a co-infection of wheat with WDV-Wheat and WDV-Barley.

Entities: Species

Keywords: Phylogenetic analysis; Recombination analysis; Sequence analysis; Wheat dwarf virus

Mesh：

Year: 2016 PMID： 27900587 DOI： 10.1007/s11262-016-1412-0

Source DB: PubMed Journal: Virus Genes ISSN： 0920-8569 Impact factor: 2.332

22 in total

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Authors: Arvind Varsani; Jesús Navas-Castillo; Enrique Moriones; Cecilia Hernández-Zepeda; Ali Idris; Judith K Brown; F Murilo Zerbini; Darren P Martin
Journal: Arch Virol Date: 2014-03-22 Impact factor: 2.574

Review 3. What is a quasispecies?

Authors: C K Biebricher; M Eigen
Journal: Curr Top Microbiol Immunol Date: 2006 Impact factor: 4.291

4. Rapid and simple method for purification of nucleic acids.

Authors: R Boom; C J Sol; M M Salimans; C L Jansen; P M Wertheim-van Dillen; J van der Noordaa
Journal: J Clin Microbiol Date: 1990-03 Impact factor: 5.948

5. Agricultural origins: centers and noncenters.

Authors: J R Harlan
Journal: Science Date: 1971-10-29 Impact factor: 47.728

6. Analysis of complete genomes of isolates of the Wheat dwarf virus from new geographical locations and descriptions of their defective forms.

Authors: Jörg Schubert; Antje Habekuß; Beilei Wu; Thomas Thieme; Xifeng Wang
Journal: Virus Genes Date: 2014-02 Impact factor: 2.332

7. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors: Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal: Mol Biol Evol Date: 2011-05-04 Impact factor: 16.240

8. A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae).

Authors: Brejnev Muhire; Darren P Martin; Judith K Brown; Jesús Navas-Castillo; Enrique Moriones; F Murilo Zerbini; Rafael Rivera-Bustamante; V G Malathi; Rob W Briddon; Arvind Varsani
Journal: Arch Virol Date: 2013-01-23 Impact factor: 2.574

Phylogenetic analysis of Wheat dwarf virus isolates from Iran.

1. Genetic diversity of Wheat dwarf virus.

2. Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus.

Review 3. What is a quasispecies?

4. Rapid and simple method for purification of nucleic acids.

5. Agricultural origins: centers and noncenters.

6. Analysis of complete genomes of isolates of the Wheat dwarf virus from new geographical locations and descriptions of their defective forms.

7. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

8. A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae).

9. DNA replication of wheat dwarf virus, a geminivirus, requires two cis-acting signals.

10. RDP4: Detection and analysis of recombination patterns in virus genomes.

1. Identification of Subgenomic DNAs Associated with Wheat Dwarf Virus Infection in Iran.

Review 2. Barcoding of Plant Viruses with Circular Single-Stranded DNA Based on Rolling Circle Amplification.