Literature DB >> 27900551

Transcriptional regulation of snRNAs and its significance for plant development.

Misato Ohtani1,2.   

Abstract

Small nuclear RNA (snRNA) represents a distinct class of non-coding RNA molecules. As these molecules have fundamental roles in RNA metabolism, including pre-mRNA splicing and ribosomal RNA processing, it is essential that their transcription be tightly regulated in eukaryotic cells. The genome of each organism contains hundreds of snRNA genes. Although the structures of these genes are highly diverse among organisms, the trans-acting factors that regulate snRNA transcription are evolutionarily conserved. Recent studies of the Arabidopsis thaliana srd2-1 mutant, which is defective in the snRNA transcription factor, provide insight into the physiological significance of snRNA regulation in plant development. Here, I review the current understanding of the molecular mechanisms underlying snRNA transcription.

Entities:  

Keywords:  Arabidopsis; SNAPc; SRD2; Transcription; snRNA

Mesh:

Substances:

Year:  2016        PMID: 27900551     DOI: 10.1007/s10265-016-0883-3

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  81 in total

1.  Characterization of a Drosophila proximal-sequence-element-binding protein involved in transcription of small nuclear RNA genes.

Authors:  Y Su; Y Song; Y Wang; L Jessop; L Zhan; W E Stumph
Journal:  Eur J Biochem       Date:  1997-08-15

Review 2.  Formation of the 3' end of histone mRNA: getting closer to the end.

Authors:  Zbigniew Dominski; William F Marzluff
Journal:  Gene       Date:  2007-05-04       Impact factor: 3.688

3.  Differential alterations in metabolic pattern of the six major UsnRNAs during development.

Authors:  R Ray; K Ray; C K Panda
Journal:  Mol Cell Biochem       Date:  1997-12       Impact factor: 3.396

4.  Identification and topological arrangement of Drosophila proximal sequence element (PSE)-binding protein subunits that contact the PSEs of U1 and U6 small nuclear RNA genes.

Authors:  Y Wang; W E Stumph
Journal:  Mol Cell Biol       Date:  1998-03       Impact factor: 4.272

5.  Small nuclear RNAs in cellular growth and differentiation. I: metabolic alterations seen in Friend erythroleukemic cells.

Authors:  G S Kuncio; L Goldstein
Journal:  J Cell Physiol       Date:  1981-11       Impact factor: 6.384

6.  A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs.

Authors:  Patricia Richard; Xavier Darzacq; Edouard Bertrand; Beáta E Jády; Céline Verheggen; Tamás Kiss
Journal:  EMBO J       Date:  2003-08-15       Impact factor: 11.598

7.  Differential requirement for the function of SRD2, an snRNA transcription activator, in various stages of plant development.

Authors:  Misato Ohtani; Taku Demura; Munetaka Sugiyama
Journal:  Plant Mol Biol       Date:  2007-12-07       Impact factor: 4.076

8.  Genomewide analysis of box C/D and box H/ACA snoRNAs in Chlamydomonas reinhardtii reveals an extensive organization into intronic gene clusters.

Authors:  Chun-Long Chen; Chong-Jian Chen; Olivier Vallon; Zhan-Peng Huang; Hui Zhou; Liang-Hu Qu
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

9.  The Trypanosoma brucei spliced leader RNA and rRNA gene promoters have interchangeable TbSNAP50-binding elements.

Authors:  Bernd Schimanski; Gabriele Laufer; Lilia Gontcharova; Arthur Günzl
Journal:  Nucleic Acids Res       Date:  2004-02-02       Impact factor: 16.971

10.  Structure and expression of the U5 snRNA gene of Arabidopsis thaliana. Conserved upstream sequence elements in plant U-RNA genes.

Authors:  P Vankan; D Edoh; W Filipowicz
Journal:  Nucleic Acids Res       Date:  1988-11-25       Impact factor: 16.971

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  7 in total

1.  Expanding the plant non-coding RNA world.

Authors:  Misato Ohtani
Journal:  J Plant Res       Date:  2017-01       Impact factor: 2.629

2.  Alternative splicing of DSP1 enhances snRNA accumulation by promoting transcription termination and recycle of the processing complex.

Authors:  Weili Wang; Xuepiao Pu; Siyu Yang; Yujie Feng; Chan Lin; Mu Li; Xi Li; Huali Li; Chunmei Meng; Qingjun Xie; Bin Yu; Yunfeng Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-03       Impact factor: 11.205

3.  Genome-Wide Identification and Expression Profiling of KCS Gene Family in Passion Fruit (Passiflora edulis) Under Fusarium kyushuense and Drought Stress Conditions.

Authors:  Hafiz Muhammad Rizwan; Fang Shaozhong; Xiaoting Li; Muhammad Bilal Arshad; Ahmed Fathy Yousef; Yang Chenglong; Meng Shi; Mohammed Y M Jaber; Muhammad Anwar; Shuai-Ya Hu; Qiang Yang; Kaiwei Sun; Mohamed A A Ahmed; Zheng Min; Ralf Oelmüller; Lin Zhimin; Faxing Chen
Journal:  Front Plant Sci       Date:  2022-04-25       Impact factor: 6.627

Review 4.  Plant snRNP Biogenesis: A Perspective from the Nucleolus and Cajal Bodies.

Authors:  Misato Ohtani
Journal:  Front Plant Sci       Date:  2018-01-04       Impact factor: 5.753

Review 5.  The role of RNA-binding protein, microRNA and alternative splicing in seed germination: a field need to be discovered.

Authors:  Xiaofei Xue; Fuchao Jiao; Haicheng Xu; Qiqing Jiao; Xin Zhang; Yong Zhang; Shangyi Du; Menghan Xi; Aiguo Wang; Jingtang Chen; Ming Wang
Journal:  BMC Plant Biol       Date:  2021-04-21       Impact factor: 4.215

6.  Functional and evolutionary analysis of the Arabidopsis 4R-MYB protein SNAPc4 as part of the SNAP complex.

Authors:  Katharina Thiedig; Bernd Weisshaar; Ralf Stracke
Journal:  Plant Physiol       Date:  2021-04-02       Impact factor: 8.340

7.  Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora.

Authors:  Samara M C Lemos; Luiz F C Fonçatti; Romain Guyot; Alexandre R Paschoal; Douglas S Domingues
Journal:  Noncoding RNA       Date:  2020-09-11
  7 in total

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