Literature DB >> 27894889

Tradeoffs in pushing the spatial resolution of fMRI for the 7T Human Connectome Project.

An T Vu1, Keith Jamison2, Matthew F Glasser3, Stephen M Smith4, Timothy Coalson3, Steen Moeller2, Edward J Auerbach2, Kamil Uğurbil2, Essa Yacoub2.   

Abstract

Whole-brain functional magnetic resonance imaging (fMRI), in conjunction with multiband acceleration, has played an important role in mapping the functional connectivity throughout the entire brain with both high temporal and spatial resolution. Ultrahigh magnetic field strengths (7T and above) allow functional imaging with even higher functional contrast-to-noise ratios for improved spatial resolution and specificity compared to traditional field strengths (1.5T and 3T). High-resolution 7T fMRI, however, has primarily been constrained to smaller brain regions given the amount of time it takes to acquire the number of slices necessary for high resolution whole brain imaging. Here we evaluate a range of whole-brain high-resolution resting state fMRI protocols (0.9, 1.25, 1.5, 1.6 and 2mm isotropic voxels) at 7T, obtained with both in-plane and slice acceleration parallel imaging techniques to maintain the temporal resolution and brain coverage typically acquired at 3T. Using the processing pipeline developed by the Human Connectome Project, we demonstrate that high resolution images acquired at 7T provide increased functional contrast to noise ratios with significantly less partial volume effects and more distinct spatial features, potentially allowing for robust individual subject parcellations and descriptions of fine-scaled patterns, such as visuotopic organization. Published by Elsevier Inc.

Entities:  

Keywords:  7T; Connectome; High-resolution; Resting state; Whole brain; fMRI

Mesh:

Year:  2016        PMID: 27894889      PMCID: PMC5445004          DOI: 10.1016/j.neuroimage.2016.11.049

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  65 in total

1.  Generalized autocalibrating partially parallel acquisitions (GRAPPA).

Authors:  Mark A Griswold; Peter M Jakob; Robin M Heidemann; Mathias Nittka; Vladimir Jellus; Jianmin Wang; Berthold Kiefer; Axel Haase
Journal:  Magn Reson Med       Date:  2002-06       Impact factor: 4.668

2.  Quantifying the spatial resolution of the gradient echo and spin echo BOLD response at 3 Tesla.

Authors:  Laura M Parkes; Jens V Schwarzbach; Annemieke A Bouts; Roel H R Deckers; Pim Pullens; Christian M Kerskens; David G Norris
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

3.  Parallel imaging performance as a function of field strength--an experimental investigation using electrodynamic scaling.

Authors:  Florian Wiesinger; Pierre-Francois Van de Moortele; Gregor Adriany; Nicola De Zanche; Kamil Ugurbil; Klaas P Pruessmann
Journal:  Magn Reson Med       Date:  2004-11       Impact factor: 4.668

4.  Time course EPI of human brain function during task activation.

Authors:  P A Bandettini; E C Wong; R S Hinks; R S Tikofsky; J S Hyde
Journal:  Magn Reson Med       Date:  1992-06       Impact factor: 4.668

5.  Ultrafast interleaved gradient-echo-planar imaging on a standard scanner.

Authors:  G C McKinnon
Journal:  Magn Reson Med       Date:  1993-11       Impact factor: 4.668

6.  Ocular dominance in human V1 demonstrated by functional magnetic resonance imaging.

Authors:  R S Menon; S Ogawa; J P Strupp; K Uğurbil
Journal:  J Neurophysiol       Date:  1997-05       Impact factor: 2.714

Review 7.  The Human Connectome Project's neuroimaging approach.

Authors:  Matthew F Glasser; Stephen M Smith; Daniel S Marcus; Jesper L R Andersson; Edward J Auerbach; Timothy E J Behrens; Timothy S Coalson; Michael P Harms; Mark Jenkinson; Steen Moeller; Emma C Robinson; Stamatios N Sotiropoulos; Junqian Xu; Essa Yacoub; Kamil Ugurbil; David C Van Essen
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

8.  Evaluation of slice accelerations using multiband echo planar imaging at 3 T.

Authors:  Junqian Xu; Steen Moeller; Edward J Auerbach; John Strupp; Stephen M Smith; David A Feinberg; Essa Yacoub; Kâmil Uğurbil
Journal:  Neuroimage       Date:  2013-07-27       Impact factor: 6.556

9.  Layer-specific fMRI reflects different neuronal computations at different depths in human V1.

Authors:  Cheryl A Olman; Noam Harel; David A Feinberg; Sheng He; Peng Zhang; Kamil Ugurbil; Essa Yacoub
Journal:  PLoS One       Date:  2012-03-20       Impact factor: 3.240

10.  Contextual Feedback to Superficial Layers of V1.

Authors:  Lars Muckli; Federico De Martino; Luca Vizioli; Lucy S Petro; Fraser W Smith; Kamil Ugurbil; Rainer Goebel; Essa Yacoub
Journal:  Curr Biol       Date:  2015-10-01       Impact factor: 10.834

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  38 in total

1.  Brain imaging with improved acceleration and SNR at 7 Tesla obtained with 64-channel receive array.

Authors:  Kamil Uğurbil; Edward Auerbach; Steen Moeller; Andrea Grant; Xiaoping Wu; Pierre-Francois Van de Moortele; Cheryl Olman; Lance DelaBarre; Scott Schillak; Jerahmie Radder; Russell Lagore; Gregor Adriany
Journal:  Magn Reson Med       Date:  2019-02-25       Impact factor: 4.668

Review 2.  RF pulse methods for use with surface coils: Frequency-modulated pulses and parallel transmission.

Authors:  Michael Garwood; Kamil Uğurbil
Journal:  J Magn Reson       Date:  2018-04-26       Impact factor: 2.229

3.  Variable slice thickness (VAST) EPI for the reduction of susceptibility artifacts in whole-brain GE-EPI at 7 Tesla.

Authors:  Sascha Brunheim; Sören Johst; Viktor Pfaffenrot; Stefan Maderwald; Harald H Quick; Benedikt A Poser
Journal:  MAGMA       Date:  2017-07-10       Impact factor: 2.310

4.  Optimized partial-coverage functional analysis pipeline (OPFAP): a semi-automated pipeline for skull stripping and co-registration of partial-coverage, ultra-high-field functional images.

Authors:  Peter E Yoo; Jon O Cleary; Scott C Kolbe; Roger J Ordidge; Terence J O'Brien; Nicholas L Opie; Sam E John; Thomas J Oxley; Bradford A Moffat
Journal:  MAGMA       Date:  2018-05-29       Impact factor: 2.310

5.  Evaluation of SLIce Dithered Enhanced Resolution Simultaneous MultiSlice (SLIDER-SMS) for human fMRI.

Authors:  An T Vu; Alex Beckett; Kawin Setsompop; David A Feinberg
Journal:  Neuroimage       Date:  2017-02-07       Impact factor: 6.556

6.  Human Connectome Project-style resting-state functional MRI at 7 Tesla using radiofrequency parallel transmission.

Authors:  Xiaoping Wu; Edward J Auerbach; An T Vu; Steen Moeller; Pierre-François Van de Moortele; Essa Yacoub; Kâmil Uğurbil
Journal:  Neuroimage       Date:  2018-09-17       Impact factor: 6.556

7.  The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services.

Authors:  Paolo Avesani; Brent McPherson; Soichi Hayashi; Cesar F Caiafa; Robert Henschel; Eleftherios Garyfallidis; Lindsey Kitchell; Daniel Bullock; Andrew Patterson; Emanuele Olivetti; Olaf Sporns; Andrew J Saykin; Lei Wang; Ivo Dinov; David Hancock; Bradley Caron; Yiming Qian; Franco Pestilli
Journal:  Sci Data       Date:  2019-05-23       Impact factor: 6.444

Review 8.  New Cognitive Neurotechnology Facilitates Studies of Cortical-Subcortical Interactions.

Authors:  Byoung-Kyong Min; Matti S Hämäläinen; Dimitrios Pantazis
Journal:  Trends Biotechnol       Date:  2020-04-08       Impact factor: 19.536

9.  Functional connectivity changes following interpersonal reactivity.

Authors:  A L Krause; L Colic; V Borchardt; M Li; B Strauss; A Buchheim; D Wildgruber; P Fonagy; T Nolte; M Walter
Journal:  Hum Brain Mapp       Date:  2017-11-21       Impact factor: 5.038

10.  Cortical fibers orientation mapping using in-vivo whole brain 7 T diffusion MRI.

Authors:  Omer F Gulban; Federico De Martino; An T Vu; Essa Yacoub; Kamil Uğurbil; Christophe Lenglet
Journal:  Neuroimage       Date:  2018-05-10       Impact factor: 6.556

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