Literature DB >> 27890575

3D hybrid modelling of vascular network formation.

Holger Perfahl1, Barry D Hughes2, Tomás Alarcón3, Philip K Maini4, Mark C Lloyd5, Matthias Reuss6, Helen M Byrne4.   

Abstract

We develop an off-lattice, agent-based model to describe vasculogenesis, the de novo formation of blood vessels from endothelial progenitor cells during development. The endothelial cells that comprise our vessel network are viewed as linearly elastic spheres that move in response to the forces they experience. We distinguish two types of endothelial cells: vessel elements are contained within the network and tip cells are located at the ends of vessels. Tip cells move in response to mechanical forces caused by interactions with neighbouring vessel elements and the local tissue environment, chemotactic forces and a persistence force which accounts for their tendency to continue moving in the same direction. Vessel elements are subject to similar mechanical forces but are insensitive to chemotaxis. An angular persistence force representing interactions with the local tissue is introduced to stabilise buckling instabilities caused by cell proliferation. Only vessel elements proliferate, at rates which depend on their degree of stretch: elongated elements have increased rates of proliferation, and compressed elements have reduced rates. Following division, the fate of the new cell depends on the local mechanical environment: the probability of forming a new sprout is increased if the parent vessel is highly compressed and the probability of being incorporated into the parent vessel increased if the parent is stretched. Simulation results reveal that our hybrid model can reproduce the key qualitative features of vasculogenesis. Extensive parameter sensitivity analyses show that significant changes in network size and morphology are induced by varying the chemotactic sensitivity of tip cells, and the sensitivities of the proliferation rate and the sprouting probability to mechanical stretch. Varying the chemotactic sensitivity directly influences the directionality of the networks. The degree of branching, and thereby the density of the networks, is influenced by the sprouting probability. Glyphs that simultaneously depict several network properties are introduced to show how these and other network quantities change over time and also as model parameters vary. We also show how equivalent glyphs constructed from in vivo data could be used to discriminate between normal and tumour vasculature and, in the longer term, for model validation. We conclude that our biomechanical hybrid model can generate vascular networks that are qualitatively similar to those generated from in vitro and in vivo experiments.
Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Agent-based modelling; Angiogenesis; Mechanical model; Vasculogenesis

Mesh:

Year:  2016        PMID: 27890575     DOI: 10.1016/j.jtbi.2016.11.013

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  17 in total

1.  A multiscale model of complex endothelial cell dynamics in early angiogenesis.

Authors:  Daria Stepanova; Helen M Byrne; Philip K Maini; Tomás Alarcón
Journal:  PLoS Comput Biol       Date:  2021-01-07       Impact factor: 4.475

Review 2.  Towards personalized computational oncology: from spatial models of tumour spheroids, to organoids, to tissues.

Authors:  Aleksandra Karolak; Dmitry A Markov; Lisa J McCawley; Katarzyna A Rejniak
Journal:  J R Soc Interface       Date:  2018-01       Impact factor: 4.118

3.  Tumorcode : A framework to simulate vascularized tumors.

Authors:  Thierry Fredrich; Michael Welter; Heiko Rieger
Journal:  Eur Phys J E Soft Matter       Date:  2018-04-26       Impact factor: 1.890

4.  Studying Tumor Angiogenesis and Cancer Invasion in a Three-Dimensional Vascularized Breast Cancer Micro-Environment.

Authors:  Madhuri Dey; Bugra Ayan; Marina Yurieva; Derya Unutmaz; Ibrahim T Ozbolat
Journal:  Adv Biol (Weinh)       Date:  2021-04-15

5.  A computational multiscale agent-based model for simulating spatio-temporal tumour immune response to PD1 and PDL1 inhibition.

Authors:  Chang Gong; Oleg Milberg; Bing Wang; Paolo Vicini; Rajesh Narwal; Lorin Roskos; Aleksander S Popel
Journal:  J R Soc Interface       Date:  2017-09       Impact factor: 4.118

6.  Angiogenic Factors produced by Hypoxic Cells are a leading driver of Anastomoses in Sprouting Angiogenesis-a computational study.

Authors:  Maurício Moreira-Soares; Rita Coimbra; Luís Rebelo; João Carvalho; Rui D M Travasso
Journal:  Sci Rep       Date:  2018-06-07       Impact factor: 4.379

7.  Bayesian inference of agent-based models: a tool for studying kidney branching morphogenesis.

Authors:  Ben Lambert; Adam L MacLean; Alexander G Fletcher; Alexander N Combes; Melissa H Little; Helen M Byrne
Journal:  J Math Biol       Date:  2018-02-01       Impact factor: 2.259

Review 8.  On Curiosity: A Fundamental Aspect of Personality, a Practice of Network Growth.

Authors:  Perry Zurn; Danielle S Bassett
Journal:  Personal Neurosci       Date:  2018-08-10

9.  Modeling triple-negative breast cancer heterogeneity: Effects of stromal macrophages, fibroblasts and tumor vasculature.

Authors:  Kerri-Ann Norton; Kideok Jin; Aleksander S Popel
Journal:  J Theor Biol       Date:  2018-05-08       Impact factor: 2.691

10.  Toward Engineering Biosystems With Emergent Collective Functions.

Authors:  Thomas E Gorochowski; Sabine Hauert; Jan-Ulrich Kreft; Lucia Marucci; Namid R Stillman; T-Y Dora Tang; Lucia Bandiera; Vittorio Bartoli; Daniel O R Dixon; Alex J H Fedorec; Harold Fellermann; Alexander G Fletcher; Tim Foster; Luca Giuggioli; Antoni Matyjaszkiewicz; Scott McCormick; Sandra Montes Olivas; Jonathan Naylor; Ana Rubio Denniss; Daniel Ward
Journal:  Front Bioeng Biotechnol       Date:  2020-06-26
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