Literature DB >> 27889811

Bacterial Diversity Patterns Differ in Soils Developing in Sub-tropical and Cool-Temperate Ecosystems.

Shankar G Shanmugam1,2, Zenaida V Magbanua3,4, Mark A Williams5, Kamlesh Jangid6, William B Whitman7, Daniel G Peterson3,4, William L Kingery3.   

Abstract

Microbial diversity patterns have been surveyed in many different soils and ecosystems, but we are unaware of studies comparing similar soils developing from similar parent materials in contrasting climates. In 2008, developmental chronosequences with ages ranging from 105 to 500,000 years across Georgia (GA) and Michigan (MI) were studied to investigate how bacterial community composition and diversity change as a result of local environmental gradients that develop during pedogenesis. Geographic factors were studied between and within locations spanning two scales: (1) regionally between 0.1 and 50 and (2) ∼1700 km apart. The diversity was surveyed using high-throughput pyrosequencing, and variance partitioning was used to describe the effects of spatial, environmental, and spatio-environmental factors on bacterial community composition. At the local scale, variation in bacterial communities was most closely related to environmental factors (rM = 0.59, p = 0.0001). There were differences in bacterial communities between the two locations, indicating spatial biogeography. Estimates of bacterial diversity were much greater in MI (numbers of OTU, ACE, and Chao1) and remained 2-3× greater in MI than GA after removing the effect of soil properties. The large differences in diversity between geographically separated bacterial communities in different climates need further investigation. It is not known if the rare members of the community, which contributed to greater bacterial diversity in GA relative to MI, play an important role in ecosystem function but has been hypothesized to play a role in ecosystem resiliency, resistance, and stability. Further research on the link between bacterial diversity and spatial variability related to climate needs further investigation.

Entities:  

Keywords:  16S rRNA sequencing; Bacterial diversity; Biogeography; Ecosystem development; Microbial ecology; Soil nutrients

Mesh:

Substances:

Year:  2016        PMID: 27889811     DOI: 10.1007/s00248-016-0884-8

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  35 in total

1.  Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland.

Authors:  Cheryl R Kuske; Lawrence O Ticknor; Mark E Miller; John M Dunbar; Jody A Davis; Susan M Barns; Jayne Belnap
Journal:  Appl Environ Microbiol       Date:  2002-04       Impact factor: 4.792

Review 2.  Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution.

Authors:  Alban Ramette; James M Tiedje
Journal:  Microb Ecol       Date:  2007-02       Impact factor: 4.552

3.  Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes.

Authors:  Jeremy A Frank; Claudia I Reich; Shobha Sharma; Jon S Weisbaum; Brenda A Wilson; Gary J Olsen
Journal:  Appl Environ Microbiol       Date:  2008-02-22       Impact factor: 4.792

4.  Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?

Authors:  Yuan Ge; Ji-zheng He; Yong-guan Zhu; Jia-bao Zhang; Zhihong Xu; Li-mei Zhang; Yuan-ming Zheng
Journal:  ISME J       Date:  2008-01-31       Impact factor: 10.302

5.  Contrasting soil pH effects on fungal and bacterial growth suggest functional redundancy in carbon mineralization.

Authors:  Johannes Rousk; Philip C Brookes; Erland Bååth
Journal:  Appl Environ Microbiol       Date:  2009-01-16       Impact factor: 4.792

Review 6.  Beyond biogeographic patterns: processes shaping the microbial landscape.

Authors:  China A Hanson; Jed A Fuhrman; M Claire Horner-Devine; Jennifer B H Martiny
Journal:  Nat Rev Microbiol       Date:  2012-05-14       Impact factor: 60.633

7.  The bacterial biogeography of British soils.

Authors:  Robert I Griffiths; Bruce C Thomson; Phillip James; Thomas Bell; Mark Bailey; Andrew S Whiteley
Journal:  Environ Microbiol       Date:  2011-04-20       Impact factor: 5.491

8.  Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau.

Authors:  Jinbo Xiong; Yongqin Liu; Xiangui Lin; Huayong Zhang; Jun Zeng; Juzhi Hou; Yongping Yang; Tandong Yao; Rob Knight; Haiyan Chu
Journal:  Environ Microbiol       Date:  2012-06-07       Impact factor: 5.491

9.  Removing noise from pyrosequenced amplicons.

Authors:  Christopher Quince; Anders Lanzen; Russell J Davenport; Peter J Turnbaugh
Journal:  BMC Bioinformatics       Date:  2011-01-28       Impact factor: 3.169

10.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

Authors:  Christian Quast; Elmar Pruesse; Pelin Yilmaz; Jan Gerken; Timmy Schweer; Pablo Yarza; Jörg Peplies; Frank Oliver Glöckner
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

View more
  3 in total

1.  Diversity and distribution of CO2-fixing microbial community along elevation gradients in meadow soils on the Tibetan Plateau.

Authors:  Haiyan Feng; Zhe Wang; Pengli Jia; Jingping Gai; Baodong Chen; Shikuan Wang
Journal:  Sci Rep       Date:  2022-06-10       Impact factor: 4.996

2.  Degradation reduces the diversity of nitrogen-fixing bacteria in the alpine wetland on the Qinghai-Tibet Plateau.

Authors:  Chengyi Li; Xilai Li; Yuanwu Yang; Yan Shi; Honglin Li
Journal:  Front Plant Sci       Date:  2022-08-04       Impact factor: 6.627

3.  The Diversity of the Endobiotic Bacterial Communities in the Four Jellyfish Species.

Authors:  Qing Liu; Xintong Chen; Xiaoya Li; Jianping Hong; Guixian Jiang; Hongyu Liang; Wenwen Liu; Zheng Xu; Jing Zhang; Wei Wang; Liang Xiao
Journal:  Pol J Microbiol       Date:  2019-11-12
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.