Literature DB >> 22580365

Beyond biogeographic patterns: processes shaping the microbial landscape.

China A Hanson1, Jed A Fuhrman, M Claire Horner-Devine, Jennifer B H Martiny.   

Abstract

Recently, microbiologists have established the existence of biogeographic patterns among a wide range of microorganisms. The focus of the field is now shifting to identifying the mechanisms that shape these patterns. Here, we propose that four processes - selection, drift, dispersal and mutation - create and maintain microbial biogeographic patterns on inseparable ecological and evolutionary scales. We consider how the interplay of these processes affects one biogeographic pattern, the distance-decay relationship, and review evidence from the published literature for the processes driving this pattern in microorganisms. Given the limitations of inferring processes from biogeographic patterns, we suggest that studies should focus on directly testing the underlying processes.

Mesh:

Year:  2012        PMID: 22580365     DOI: 10.1038/nrmicro2795

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  69 in total

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2.  Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors.

Authors:  Benjamin Kerr; Margaret A Riley; Marcus W Feldman; Brendan J M Bohannan
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

3.  Dormancy contributes to the maintenance of microbial diversity.

Authors:  Stuart E Jones; Jay T Lennon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

4.  Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly.

Authors:  Joaquín M Ayarza; Leonardo Erijman
Journal:  Microb Ecol       Date:  2010-10-23       Impact factor: 4.552

5.  Neutral assembly of bacterial communities.

Authors:  Stephen Woodcock; Christopher J van der Gast; Thomas Bell; Mary Lunn; Thomas P Curtis; Ian M Head; William T Sloan
Journal:  FEMS Microbiol Ecol       Date:  2007-11       Impact factor: 4.194

6.  The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales.

Authors:  Katleen Van der Gucht; Karl Cottenie; Koenraad Muylaert; Nele Vloemans; Sylvie Cousin; Steven Declerck; Erik Jeppesen; Jose-Maria Conde-Porcuna; Klaus Schwenk; Gabriel Zwart; Hanne Degans; Wim Vyverman; Luc De Meester
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-11       Impact factor: 11.205

7.  Local and regional factors influencing bacterial community assembly.

Authors:  Eva S Lindström; Silke Langenheder
Journal:  Environ Microbiol Rep       Date:  2011-04-20       Impact factor: 3.541

8.  Genome evolution and adaptation in a long-term experiment with Escherichia coli.

Authors:  Jeffrey E Barrick; Dong Su Yu; Sung Ho Yoon; Haeyoung Jeong; Tae Kwang Oh; Dominique Schneider; Richard E Lenski; Jihyun F Kim
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

9.  Phylogenetic relatedness predicts priority effects in nectar yeast communities.

Authors:  Kabir G Peay; Melinda Belisle; Tadashi Fukami
Journal:  Proc Biol Sci       Date:  2011-07-20       Impact factor: 5.349

Review 10.  Metagenomic pyrosequencing and microbial identification.

Authors:  Joseph F Petrosino; Sarah Highlander; Ruth Ann Luna; Richard A Gibbs; James Versalovic
Journal:  Clin Chem       Date:  2009-03-05       Impact factor: 8.327

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  344 in total

1.  Vegetation-associated impacts on arctic tundra bacterial and microeukaryotic communities.

Authors:  Yu Shi; Xingjia Xiang; Congcong Shen; Haiyan Chu; Josh D Neufeld; Virginia K Walker; Paul Grogan
Journal:  Appl Environ Microbiol       Date:  2014-10-31       Impact factor: 4.792

2.  Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment.

Authors:  Mohammad Bahram; Petr Kohout; Sten Anslan; Helery Harend; Kessy Abarenkov; Leho Tedersoo
Journal:  ISME J       Date:  2015-09-22       Impact factor: 10.302

3.  Plant Host Species and Geographic Distance Affect the Structure of Aboveground Fungal Symbiont Communities, and Environmental Filtering Affects Belowground Communities in a Coastal Dune Ecosystem.

Authors:  Aaron S David; Eric W Seabloom; Georgiana May
Journal:  Microb Ecol       Date:  2015-12-01       Impact factor: 4.552

4.  Global diversity and biogeography of deep-sea pelagic prokaryotes.

Authors:  Guillem Salazar; Francisco M Cornejo-Castillo; Verónica Benítez-Barrios; Eugenio Fraile-Nuez; X Antón Álvarez-Salgado; Carlos M Duarte; Josep M Gasol; Silvia G Acinas
Journal:  ISME J       Date:  2015-08-07       Impact factor: 10.302

Review 5.  Microbial ecology of Antarctic aquatic systems.

Authors:  Ricardo Cavicchioli
Journal:  Nat Rev Microbiol       Date:  2015-10-12       Impact factor: 60.633

6.  Interactions between hydrology and water chemistry shape bacterioplankton biogeography across boreal freshwater networks.

Authors:  Juan Pablo Niño-García; Clara Ruiz-González; Paul A Del Giorgio
Journal:  ISME J       Date:  2016-02-05       Impact factor: 10.302

7.  Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?

Authors:  Luciana F Santoferrara; Jean-David Grattepanche; Laura A Katz; George B McManus
Journal:  ISME J       Date:  2016-02-05       Impact factor: 10.302

8.  Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages.

Authors:  Cheryl P Andam; Mallory J Choudoir; Anh Vinh Nguyen; Han Sol Park; Daniel H Buckley
Journal:  ISME J       Date:  2016-02-05       Impact factor: 10.302

Review 9.  Microbial Speciation.

Authors:  B Jesse Shapiro; Martin F Polz
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-09-09       Impact factor: 10.005

10.  Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities.

Authors:  Peter Morrison-Whittle; Matthew R Goddard
Journal:  ISME J       Date:  2015-03-10       Impact factor: 10.302

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