Literature DB >> 27889408

An RNA-Based Fluorescent Biosensor for High-Throughput Analysis of the cGAS-cGAMP-STING Pathway.

Debojit Bose1, Yichi Su1, Assaf Marcus2, David H Raulet2, Ming C Hammond3.   

Abstract

In mammalian cells, the second messenger (2'-5',3'-5') cyclic guanosine monophosphate-adenosine monophosphate (2',3'-cGAMP), is produced by the cytosolic DNA sensor cGAMP synthase (cGAS), and subsequently bound by the stimulator of interferon genes (STING) to trigger interferon response. Thus, the cGAS-cGAMP-STING pathway plays a critical role in pathogen detection, as well as pathophysiological conditions including cancer and autoimmune disorders. However, studying and targeting this immune signaling pathway has been challenging due to the absence of tools for high-throughput analysis. We have engineered an RNA-based fluorescent biosensor that responds to 2',3'-cGAMP. The resulting "mix-and-go" cGAS activity assay shows excellent statistical reliability as a high-throughput screening (HTS) assay and distinguishes between direct and indirect cGAS inhibitors. Furthermore, the biosensor enables quantitation of 2',3'-cGAMP in mammalian cell lysates. We envision this biosensor-based assay as a resource to study the cGAS-cGAMP-STING pathway in the context of infectious diseases, cancer immunotherapy, and autoimmune diseases.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  GEMM-II; STING; Spinach aptamer; cGAMP; cGAS; cyclic AMP-GMP; cyclic GMP-AMP; cyclic dinucleotide; high-throughput screen; riboswitch

Year:  2016        PMID: 27889408      PMCID: PMC5397252          DOI: 10.1016/j.chembiol.2016.10.014

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  59 in total

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3.  Fluorescent RNA Aptamers as a Tool to Study RNA-Modifying Enzymes.

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Journal:  Cell Chem Biol       Date:  2016-02-11       Impact factor: 8.116

4.  Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.

Authors:  Lijun Sun; Jiaxi Wu; Fenghe Du; Xiang Chen; Zhijian J Chen
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5.  Liposomes loaded with a STING pathway ligand, cyclic di-GMP, enhance cancer immunotherapy against metastatic melanoma.

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Journal:  J Control Release       Date:  2015-08-14       Impact factor: 9.776

6.  RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP.

Authors:  Colleen A Kellenberger; Stephen C Wilson; Jade Sales-Lee; Ming C Hammond
Journal:  J Am Chem Soc       Date:  2013-03-21       Impact factor: 15.419

7.  DNA intercalation by quinacrine and methylene blue: a comparative binding and thermodynamic characterization study.

Authors:  Maidul Hossain; Prabal Giri; Gopinatha Suresh Kumar
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8.  STING manifests self DNA-dependent inflammatory disease.

Authors:  Jeonghyun Ahn; Delia Gutman; Shinobu Saijo; Glen N Barber
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-06       Impact factor: 11.205

9.  An allosteric self-splicing ribozyme triggered by a bacterial second messenger.

Authors:  Elaine R Lee; Jenny L Baker; Zasha Weinberg; Narasimhan Sudarsan; Ronald R Breaker
Journal:  Science       Date:  2010-08-13       Impact factor: 47.728

10.  STING-dependent recognition of cyclic di-AMP mediates type I interferon responses during Chlamydia trachomatis infection.

Authors:  Jeffrey R Barker; Benjamin J Koestler; Victoria K Carpenter; Dara L Burdette; Christopher M Waters; Russell E Vance; Raphael H Valdivia
Journal:  mBio       Date:  2013-04-30       Impact factor: 7.867

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  18 in total

1.  In vivo biosensors: mechanisms, development, and applications.

Authors:  Shuobo Shi; Ee Lui Ang; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2018-01-29       Impact factor: 3.346

2.  Development of cGAMP-Luc, a sensitive and precise coupled enzyme assay to measure cGAMP in complex biological samples.

Authors:  Rachel E Mardjuki; Jacqueline A Carozza; Lingyin Li
Journal:  J Biol Chem       Date:  2020-03-03       Impact factor: 5.157

3.  Imaging Intracellular S-Adenosyl Methionine Dynamics in Live Mammalian Cells with a Genetically Encoded Red Fluorescent RNA-Based Sensor.

Authors:  Xing Li; Liuting Mo; Jacob L Litke; Sourav Kumar Dey; Scott R Suter; Samie R Jaffrey
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Review 4.  RNA-based fluorescent biosensors for live cell imaging of small molecules and RNAs.

Authors:  Yichi Su; Ming C Hammond
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Review 5.  Synthetic Biology of Small RNAs and Riboswitches.

Authors:  Jordan K Villa; Yichi Su; Lydia M Contreras; Ming C Hammond
Journal:  Microbiol Spectr       Date:  2018-05

Review 6.  Signaling by cGAS-STING in Neurodegeneration, Neuroinflammation, and Aging.

Authors:  Bindu D Paul; Solomon H Snyder; Vilhelm A Bohr
Journal:  Trends Neurosci       Date:  2020-11-10       Impact factor: 13.837

7.  Naturally occurring three-way junctions can be repurposed as genetically encoded RNA-based sensors.

Authors:  Jared D Moon; Jiahui Wu; Sourav K Dey; Jacob L Litke; Xing Li; Hyaeyeong Kim; Samie R Jaffrey
Journal:  Cell Chem Biol       Date:  2021-05-18       Impact factor: 8.116

Review 8.  Regulation and inhibition of the DNA sensor cGAS.

Authors:  Jonny Hertzog; Jan Rehwinkel
Journal:  EMBO Rep       Date:  2020-11-05       Impact factor: 9.071

Review 9.  Light-Up RNA Aptamers and Their Cognate Fluorogens: From Their Development to Their Applications.

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Review 10.  cGAS/STING Pathway in Cancer: Jekyll and Hyde Story of Cancer Immune Response.

Authors:  Debojit Bose
Journal:  Int J Mol Sci       Date:  2017-11-18       Impact factor: 5.923

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