Literature DB >> 27888462

Deinococcus rubellus sp. nov., bacteria isolated from the muscle of antarctic fish.

Seok-Gwan Choi1, Seon Hwa Jeon2, Jae-Bong Lee1, Eun Sun Joo2, Sangyong Lim3, Hee-Young Jung4,5, Myung Kyum Kim6.   

Abstract

Two new bacterial strains designated as Ant6T and Ant18 were isolated from the muscle of a fish which had been caught in the Antarctic Ocean. Both strains are Gram-stain-positive, catalase positive, oxidase negative, aerobic, and coccoid bacteria. Phylogenetic analysis based on the 16S rRNA gene sequences of strains Ant6T and Ant18 revealed that the strains Ant6T and Ant18 belong to the genus Deinococcus in the family Deinococcaceae in the class Deinococci. The highest degrees of sequence similarities of strains Ant6T and Ant18 were found with Deinococcus alpinitundrae LMG 24283T by 96.4% and 96.8%, respectively. Strain Ant6T exhibited a high level of DNA- DNA hybridization values with strain Ant18 (82 ± 0.6%). Chemotaxonomic data revealed that the predominant fatty acids were C17: 0 cyclo, 16:0, and feature 3 (C16:1 ω6c/ω7c) for both strains. A complex polar lipid profile consisted of major amounts of unknown phosphoglycolipids (PGL) and unknown aminophospholipid (APL). Based on the phylogenetic, phenotypic, and chemotaxonomic data, strains Ant6T (=KEMB 9004-169T =JCM 31434T) and Ant18 (=KEMB 9004-170) should be classified as a new species, for which the name Deinococcus rubellus sp. nov. is proposed.

Entities:  

Keywords:  Deinococcaceae; Deinococcus; UV; gamma ray

Mesh:

Substances:

Year:  2016        PMID: 27888462     DOI: 10.1007/s12275-016-6390-3

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  21 in total

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Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
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Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  Comparison of Biolog GEN III MicroStation semi-automated bacterial identification system with matrix-assisted laser desorption ionization-time of flight mass spectrometry and 16S ribosomal RNA gene sequencing for the identification of bacteria of veterinary interest.

Authors:  P Wragg; L Randall; A M Whatmore
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6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Deinococcus daejeonensis sp. nov., isolated from sludge in a sewage disposal plant.

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Journal:  Int J Syst Evol Microbiol       Date:  2011-07-15       Impact factor: 2.747

8.  Deinococcus puniceus sp. nov., a bacterium isolated from soil-irradiated gamma radiation.

Authors:  Jae-Jin Lee; Sathiyaraj Srinivasan; Sangyong Lim; Minho Joe; Seonghun Im; Myung Kyum Kim
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10.  Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents.

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Journal:  Bioprocess Biosyst Eng       Date:  2013-01-25       Impact factor: 3.210

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