| Literature DB >> 27887969 |
Sofie S Meyer1, James Bonaiuto2, Mark Lim3, Holly Rossiter4, Sheena Waters2, David Bradbury4, Sven Bestmann2, Matthew Brookes5, Martina F Callaghan4, Nikolaus Weiskopf6, Gareth R Barnes4.
Abstract
BACKGROUND: In combination with magnetoencephalographic (MEG) data, accurate knowledge of the brain's structure and location provide a principled way of reconstructing neural activity with high temporal resolution. However, measuring the brain's location is compromised by head movement during scanning, and by fiducial-based co-registration with magnetic resonance imaging (MRI) data. The uncertainty from these two factors introduces errors into the forward model and limit the spatial resolution of the data. NEWEntities:
Keywords: 3D printing; Head localization; Head movement minimization; Head-cast; MRI-MEG Co-registration; Magnetoencephalography; Spatial resolution
Mesh:
Year: 2016 PMID: 27887969 PMCID: PMC5260820 DOI: 10.1016/j.jneumeth.2016.11.009
Source DB: PubMed Journal: J Neurosci Methods ISSN: 0165-0270 Impact factor: 2.390
Fig. 1Overview of head-cast construction steps. a) Head surface is extracted from an anatomical MRI image using the standard SPM12 segmentation procedure. b) Head surface extraction is converted to a surface file and fiducial coils are added. The coil locations are defined in MRI coordinates. c) A positioning cylinder at the top of the head is added to the virtual model to define the position of the head inside the head-cast. Eye extensions are added to enable vision during use. d) Using and adjusting the positioning cylinder, eye extensions and ear extensions, the virtual head model is positioned appropriately inside a virtual copy of the MEG dewar. e) The positive head model is 3D printed. f) The 3D print is placed inside the manufacturer-provided dewar copy (as in d) and foam resin is poured in to fill the gap between the printed positive head model and the dewar. The fiducial coil protrusions on the 3D printed head result in coil-shaped and coil-sized indentations in the head-cast (the nasion coil protrusion is visible between the eyes in e). g) The subject can now wear the flexible foam head-cast and enter into the (real) MEG dewar for scanning.
Fig. 2Between-session head movement results from Experiment 1 (re-positioning trials where each of the four subjects came out of the scanner, removed the head-cast, put it back on and re-entered 10 times). a) Variability of absolute coil locations. Dots show the standard deviation of the absolute coil location over the course of the experiment. Repositioning is precise to within <0.6 mm standard deviation for any coil in any dimension. b) Coil-coil distance variability. The standard deviations are calculated from the distances between the fiducial coils measured in Experiment 1. The distances vary <0.5 mm which is within the range of measurement error, as illustrated by the phantom measurements (black squares). c) Reference coil-standard coil distance variability. Same format as b, but based on the distances between each of the three standard fiducial coils and a reference coil placed on the nose. There is more variability with normal subjects than the phantom. d) Scatter plot showing absolute locations of reference coil in head-centred (standard coil-defined) space. This plot illustrates dimensions along which the reference coil location varies relative to the standard coils: mostly in the Z dimension (up-down). e) Location of the reference coil in head-centred space. Bars encode standard deviation of absolute position of the reference coil in head-centred space measured across 10 repositioning trials. The location of the reference coil deviates <1.2 mm from the fiducial coils in the worst case. Note that variability along the Z dimension is also relatively high with the phantom. The standard deviation over all subjects was 0.50, 0.57, and 0.80 mm for the X, Y and Z dimensions respectively.
Fig. 3Within-session head movement. Data from Experiment 2. a) Absolute location of the left coil in the X, Y and Z dimensions over the course of 12 (colour coded) 15-min trials. The location is mean-corrected individually for each trial. We find that the variability across time is negligible. The largest movements are downwards (from positive to negative) in line with the subject sliding down in the chair. b) Circles show the standard deviations of the absolute coil locations for all 12 trials in all dimensions and for all coils. The standard deviation of the locations recorded was 0.22 mm at maximum. Z (vertical) is consistently the most variable dimension.
Fig. 4Consistency of data features across four separate scanning days. Coloured spheres represent beta (15–30 Hz) rebound peaks from Experiment 2. The peak locations reflect the maximum chi square statistic when comparing pre-button press data (−1500–−1000 ms) to post-button press data (500–1000 ms) across a 20 mm radius, 1 × 1 × 1 mm3 resolution sphere centred around the average left primary motor cortex peak (−34, −30, 52). Note that the solutions were not constrained by the mesh as reconstruction was volumetric. Data shown are smoothed using an 8 mm kernel.