Literature DB >> 27875702

Revisiting Neuronal Cell Type Classification in Caenorhabditis elegans.

Oliver Hobert1, Lori Glenwinkel2, John White3.   

Abstract

We revisit the classification of neuronal cell types in the nervous system of the nematode Caenorhabditis elegans. Based on anatomy and synaptic connectivity patterns, the 302 neurons of the nervous system of the hermaphrodite were categorized into 118 neuron classes more than 30 years ago. Analysis of all presently available neuronal gene expression patterns reveals a remarkable congruence of anatomical and molecular classification and further suggests subclassification schemes. Transcription factor expression profiles alone are sufficient to uniquely classify more than 90% of all neuron classes in the C. elegans nervous system. Neuron classification in C. elegans may be paradigmatic for neuron classification schemes in vertebrate nervous systems.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27875702     DOI: 10.1016/j.cub.2016.10.027

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  32 in total

1.  Expansion microscopy of C. elegans.

Authors:  Chih-Chieh Jay Yu; Nicholas C Barry; Asmamaw T Wassie; Anubhav Sinha; Abhishek Bhattacharya; Shoh Asano; Chi Zhang; Fei Chen; Oliver Hobert; Miriam B Goodman; Gal Haspel; Edward S Boyden
Journal:  Elife       Date:  2020-05-01       Impact factor: 8.140

2.  Seeing how we smell.

Authors:  Helene Benveniste; Yuri Lazebnik; Nora D Volkow
Journal:  J Clin Invest       Date:  2017-01-23       Impact factor: 14.808

3.  Lineage context switches the function of a C. elegans Pax6 homolog in determining a neuronal fate.

Authors:  Julia P Brandt; Mary Rossillo; Zhuo Du; David Ichikawa; Kristopher Barnes; Allison Chen; Marcus Noyes; Zhirong Bao; Niels Ringstad
Journal:  Development       Date:  2019-04-15       Impact factor: 6.868

Review 4.  The CeNGEN Project: The Complete Gene Expression Map of an Entire Nervous System.

Authors:  Marc Hammarlund; Oliver Hobert; David M Miller; Nenad Sestan
Journal:  Neuron       Date:  2018-08-08       Impact factor: 17.173

5.  Comprehensive single-cell transcriptional profiling of a multicellular organism.

Authors:  Junyue Cao; Jonathan S Packer; Vijay Ramani; Darren A Cusanovich; Chau Huynh; Riza Daza; Xiaojie Qiu; Choli Lee; Scott N Furlan; Frank J Steemers; Andrew Adey; Robert H Waterston; Cole Trapnell; Jay Shendure
Journal:  Science       Date:  2017-08-18       Impact factor: 47.728

6.  Repression of an activity-dependent autocrine insulin signal is required for sensory neuron development in C. elegans.

Authors:  Lauren Bayer Horowitz; Julia P Brandt; Niels Ringstad
Journal:  Development       Date:  2019-11-19       Impact factor: 6.868

7.  Uncovering the genetic blueprint of the C. elegans nervous system.

Authors:  István A Kovács; Dániel L Barabási; Albert-László Barabási
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

8.  A Genetic Model of the Connectome.

Authors:  Dániel L Barabási; Albert-László Barabási
Journal:  Neuron       Date:  2019-12-02       Impact factor: 17.173

9.  Endogenous RNAi Pathways Are Required in Neurons for Dauer Formation in Caenorhabditis elegans.

Authors:  Pallavi S Bharadwaj; Sarah E Hall
Journal:  Genetics       Date:  2017-01-25       Impact factor: 4.562

10.  A transcription factor collective defines the HSN serotonergic neuron regulatory landscape.

Authors:  Carla Lloret-Fernández; Miren Maicas; Carlos Mora-Martínez; Alejandro Artacho; Ángela Jimeno-Martín; Laura Chirivella; Peter Weinberg; Nuria Flames
Journal:  Elife       Date:  2018-03-22       Impact factor: 8.140

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