Literature DB >> 27874866

Oxadiazole grafts in peptide macrocycles.

John R Frost1, Conor C G Scully1, Andrei K Yudin1.   

Abstract

Synthetic methods that provide control over macrocycle conformation and, at the same time, mitigate the polarity of peptide bonds represent valuable tools for the discovery of new bioactive molecules. Here, we report a macrocyclization reaction between a linear peptide, an aldehyde and (N-isocyanimino)triphenylphosphorane. This process generates head-to-tail cyclic peptidomimetics in a single step. This method is tolerant to variation in the peptide and aldehyde components and has been applied for the synthesis of 15-, 18-, 21- and 24-membered rings. The resulting peptide macrocycles feature a 1,3,4-oxadiazole and a tertiary amine in their scaffolds. This non-canonical backbone region acts as an endocyclic control element that promotes and stabilizes a unique intramolecular hydrogen-bond network and can lead to macrocycles with conformationally rigid turn structures. Oxadiazole-containing macrocycles can also display a high passive membrane permeability, an important property for the development of bioavailable peptide-based therapeutics.

Entities:  

Year:  2016        PMID: 27874866     DOI: 10.1038/nchem.2636

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  39 in total

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Journal:  J Org Chem       Date:  2012-06-14       Impact factor: 4.354

2.  Conformational flexibility, internal hydrogen bonding, and passive membrane permeability: successful in silico prediction of the relative permeabilities of cyclic peptides.

Authors:  Taha Rezai; Jonathan E Bock; Mai V Zhou; Chakrapani Kalyanaraman; R Scott Lokey; Matthew P Jacobson
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3.  Macrocyclic peptidomimetics: potential for drug development.

Authors:  R P McGeary; D P Fairlie
Journal:  Curr Opin Drug Discov Devel       Date:  1998-09

Review 4.  The exploration of macrocycles for drug discovery--an underexploited structural class.

Authors:  Edward M Driggers; Stephen P Hale; Jinbo Lee; Nicholas K Terrett
Journal:  Nat Rev Drug Discov       Date:  2008-07       Impact factor: 84.694

5.  Total synthesis, structure, and oral absorption of a thiazole cyclic peptide, sanguinamide A.

Authors:  Daniel S Nielsen; Huy N Hoang; Rink-Jan Lohman; Frederik Diness; David P Fairlie
Journal:  Org Lett       Date:  2012-11-06       Impact factor: 6.005

6.  NBO 6.0: natural bond orbital analysis program.

Authors:  Eric D Glendening; Clark R Landis; Frank Weinhold
Journal:  J Comput Chem       Date:  2013-03-09       Impact factor: 3.376

7.  Stitched α-helical peptides via bis ring-closing metathesis.

Authors:  Gerard J Hilinski; Young-Woo Kim; Jooyeon Hong; Peter S Kutchukian; Charisse M Crenshaw; Shaunna S Berkovitch; Andrew Chang; Sihyun Ham; Gregory L Verdine
Journal:  J Am Chem Soc       Date:  2014-08-21       Impact factor: 15.419

8.  Assessing helical protein interfaces for inhibitor design.

Authors:  Brooke N Bullock; Andrea L Jochim; Paramjit S Arora
Journal:  J Am Chem Soc       Date:  2011-08-22       Impact factor: 15.419

9.  All-atom model for stabilization of alpha-helical structure in peptides by hydrocarbon staples.

Authors:  Peter S Kutchukian; Jae Shick Yang; Gregory L Verdine; Eugene I Shakhnovich
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

10.  Oxadiazole-Based Cell Permeable Macrocyclic Transition State Inhibitors of Norovirus 3CL Protease.

Authors:  Vishnu C Damalanka; Yunjeong Kim; Kevin R Alliston; Pathum M Weerawarna; Anushka C Galasiti Kankanamalage; Gerald H Lushington; Nurjahan Mehzabeen; Kevin P Battaile; Scott Lovell; Kyeong-Ok Chang; William C Groutas
Journal:  J Med Chem       Date:  2016-02-08       Impact factor: 7.446

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  23 in total

1.  Development of a Platform To Enable Efficient Permeability Evaluation of Novel Organo-Peptide Macrocycles.

Authors:  Brett A Hopkins; Hyelee Lee; Sookhee Ha; Lisa Nogle; Berengere Sauvagnat; Spencer McMinn; Graham F Smith; Nunzio Sciammetta
Journal:  ACS Med Chem Lett       Date:  2019-05-09       Impact factor: 4.345

2.  Illuminating the dark conformational space of macrocycles using dominant rotors.

Authors:  Diego B Diaz; Solomon D Appavoo; Anastasia F Bogdanchikova; Yury Lebedev; Timothy J McTiernan; Gabriel Dos Passos Gomes; Andrei K Yudin
Journal:  Nat Chem       Date:  2021-02-15       Impact factor: 24.427

3.  Macrocyclic peptides: Tying up loose ends.

Authors:  Fumito Saito; Jeffrey W Bode
Journal:  Nat Chem       Date:  2016-11-22       Impact factor: 24.427

4.  1,3,4-Oxadiazole and Heteroaromatic-Fused 1,2,4-Triazole Synthesis using Diverted Umpolung Amide Synthesis.

Authors:  Kazuyuki Tokumaru; Kalisankar Bera; Jeffrey N Johnston
Journal:  Synthesis (Stuttg)       Date:  2017-08-07       Impact factor: 3.157

5.  Understanding Cell Penetration of Cyclic Peptides.

Authors:  Patrick G Dougherty; Ashweta Sahni; Dehua Pei
Journal:  Chem Rev       Date:  2019-05-14       Impact factor: 60.622

6.  Novel Isoindolinone-Based Analogs of the Natural Cyclic Peptide Fenestin A: Synthesis and Antitumor Activity.

Authors:  Huanli Zhang; Jingwan Wu; Jingchun Wang; Shimei Xiao; Lei Zhao; Rui Yan; Xiaodan Wu; Zhiqiang Wang; Li Fan; Yingxue Jin
Journal:  ACS Med Chem Lett       Date:  2022-06-29       Impact factor: 4.632

7.  Versatile Peptide Macrocyclization with Diels-Alder Cycloadditions.

Authors:  Jeffrey E Montgomery; Justin A Donnelly; Sean W Fanning; Thomas E Speltz; Xianghang Shangguan; John S Coukos; Geoffrey L Greene; Raymond E Moellering
Journal:  J Am Chem Soc       Date:  2019-09-26       Impact factor: 15.419

Review 8.  Emerging Methods and Design Principles for Cell-Penetrant Peptides.

Authors:  Leila Peraro; Joshua A Kritzer
Journal:  Angew Chem Int Ed Engl       Date:  2018-08-17       Impact factor: 15.336

Review 9.  Antimicrobial Activity of 1,3,4-Oxadiazole Derivatives.

Authors:  Teresa Glomb; Piotr Świątek
Journal:  Int J Mol Sci       Date:  2021-06-29       Impact factor: 5.923

10.  Oxetane Grafts Installed Site-Selectively on Native Disulfides to Enhance Protein Stability and Activity In Vivo.

Authors:  Nuria Martínez-Sáez; Shuang Sun; Davide Oldrini; Pietro Sormanni; Omar Boutureira; Filippo Carboni; Ismael Compañón; Michael J Deery; Michele Vendruscolo; Francisco Corzana; Roberto Adamo; Gonçalo J L Bernardes
Journal:  Angew Chem Int Ed Engl       Date:  2017-10-20       Impact factor: 15.336

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