Literature DB >> 27872952

Molecular Phylogenetics and the Perennial Problem of Homology.

S Andrew Inkpen1,2, W Ford Doolittle3.   

Abstract

The concept of homology has a long history, during much of which the issue has been how to reconcile similarity and common descent when these are not coextensive. Although thinking molecular phylogeneticists have learned not to say "percent homology," the problems are deeper than that and unresolved.

Keywords:  Homology; Molecular phylogenetics; Philosophy of biology

Mesh:

Year:  2016        PMID: 27872952     DOI: 10.1007/s00239-016-9766-4

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  33 in total

1.  Understanding hierarchical protein evolution from first principles.

Authors:  N V Dokholyan; E I Shakhnovich
Journal:  J Mol Biol       Date:  2001-09-07       Impact factor: 5.469

Review 2.  Protein families and their evolution-a structural perspective.

Authors:  Christine A Orengo; Janet M Thornton
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

3.  Speculations on the early course of evolution.

Authors:  J E Darnell; W F Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

4.  The formation of the theory of homology in biological sciences.

Authors:  Karel Kleisner
Journal:  Acta Biotheor       Date:  2007-10-10       Impact factor: 1.774

5.  Distinguishing homologous from analogous proteins.

Authors:  W M Fitch
Journal:  Syst Zool       Date:  1970-06

Review 6.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

Review 7.  Convergent evolution: the need to be explicit.

Authors:  R F Doolittle
Journal:  Trends Biochem Sci       Date:  1994-01       Impact factor: 13.807

8.  The Defensins Consist of Two Independent, Convergent Protein Superfamilies.

Authors:  Thomas M A Shafee; Fung T Lay; Mark D Hulett; Marilyn A Anderson
Journal:  Mol Biol Evol       Date:  2016-06-13       Impact factor: 16.240

9.  An empirical test of convergent evolution in rhodopsins.

Authors:  Kristine A Mackin; Richard A Roy; Douglas L Theobald
Journal:  Mol Biol Evol       Date:  2013-09-27       Impact factor: 16.240

10.  Helical antifreeze proteins have independently evolved in fishes on four occasions.

Authors:  Laurie A Graham; Rod S Hobbs; Garth L Fletcher; Peter L Davies
Journal:  PLoS One       Date:  2013-12-06       Impact factor: 3.240

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