| Literature DB >> 27871272 |
Chang-Hong Wang1, Cong Liu1, En-Zhao Cong1, Gai-Ling Xu1, Ting-Ting Lv1, Ying-Li Zhang1, Qiu-Fen Ning1, Ji-Kang Wang1, Hui-Yao Nie2, Yan Li3.
Abstract
BACKGROUND: Oppositional defiant disorder (ODD) is a behavioral disorder of school-age population. It is well known that 5-HT dysfunction is correlated with impulsivity, which is one of the common characteristics of ODD. The enzyme tryptophan hydroxylase-2 (TPH-2) synthesizes 5-HT in serotonergic neurons of the midbrain raphe. The purposes of this study were to investigate the potential association of TPH-2 polymorphisms with susceptibility to ODD in a Han Chinese school population.Entities:
Keywords: Oppositional defiant disorder; Single nucleotide polymorphisms; Tryptophan hydroxylase-2 gene
Mesh:
Substances:
Year: 2016 PMID: 27871272 PMCID: PMC5117514 DOI: 10.1186/s12993-016-0113-0
Source DB: PubMed Journal: Behav Brain Funct ISSN: 1744-9081 Impact factor: 3.759
Primer sequences of these four loci
| SNP ID | Primer sequence (5′–3′) |
|---|---|
| rs4570625 | F: 5′-GAACCCTTACCTTTCCTTTG-3′ |
| R: 5′Acry-TCCACTCTTCCAGTTATTTT-3′ | |
| rs11178997 | F: 5′-GTGTTCGGGAGCACAATAAT-3′ |
| R: 5′ Acry -AAGCCTGCCACTGGAAGTT-3′ | |
| rs1386494 | F: 5′-TGTTTCTCGCAGGTTGTTGG-3′ |
| R: 5′ Acry-AGCAAATGAATCACAAAGGG-3′ | |
| rs7305115 | F: 5′-TAGTTGGTTTTTCTGTTGC-3′ |
| R: 5′Acry-CCCTTTTCTCTTTAGGTGAG-3′ |
Sequences of the four primers
Genotype and allele frequency distribution of the four loci of THP-2 between two groups
| Locus | Genotype (%) |
|
| Allele (%) |
|
| |||
|---|---|---|---|---|---|---|---|---|---|
| rs4570625 | GG | GT | TT | 4.525 | 0.104 | G | T | 1.729 | 0.189 |
| ODD | 27 (23.3) | 51 (44.0) | 38 (32.8) | 105 (45.3) | 127 (54.7) | ||||
| Control | 36 (23.7) | 83 (54.6) | 33 (21.7) | 155 (51.0) | 149 (49.0) | ||||
| rs11178997 | AA | AT | TT | 1.092 | 0.579 | A | T | 0.783 | 0.376 |
| ODD | 6 (4.9) | 33 (26.8) | 84 (68.3) | 45 (18.3) | 201 (81.7) | ||||
| Control | 4 (2.6) | 39 (25.7) | 109 (71.7) | 47 (15.5) | 257 (84.5) | ||||
| rs1386494 | AA | AG | GG | 4.163 | 0.041* | A | G | 3.930 | 0.047* |
| ODD | 0 | 8 (6.5) | 116 (93.5) | 8 (3.2) | 240 (96.8) | ||||
| Control | 0 | 21 (14.1) | 128 (85.9) | 21 (7.0) | 277 (93.0) | ||||
| rs7305115 | AA | AG | GG | 0.756 | 0.685 | A | G | 0.780 | 0.377 |
| ODD | 34 (28.6) | 56 (47.1) | 29 (24.4) | 124 (52.1) | 114 (47.9) | ||||
| Control | 35 (25.2) | 64 (46.0) | 40 (28.8) | 134 (48.2) | 144 (51.8) | ||||
* P<0.05
rs4570625 Hardy–Weinberg Equilibrium test between ODD and control group
| Group | Genotype | |||||
|---|---|---|---|---|---|---|
| GG | GT | TT | Total | χ2 |
| |
| ODD group | 1.474 | 0.225 | ||||
| Observation (O) | 27 | 51 | 38 | 116 | ||
| Expectation (E) | 23.761 | 57.478 | 34.761 | 116 | ||
| Control group | 1.301 | 0.254 | ||||
| Observation (O) | 36 | 83 | 33 | 152 | ||
| Expectation (E) | 39.515 | 75.970 | 36.51 | 152 | ||
df = 1
rs11178997 Hardy–Weinberg equilibrium test between ODD and control group
| Group | Genotype | ||||||
|---|---|---|---|---|---|---|---|
| AA | AT | TT | Total | χ2 | χ2* |
| |
| ODD group | 1.292 | 0.256 | |||||
| Observation (O) | 6 | 33 | 84 | 123 | |||
| Expectation (E) | 4.116* | 36.768 | 82.116 | 123 | |||
| Control group | 0.052 | 0.820 | |||||
| Observation (O) | 4 | 39 | 109 | 152 | |||
| Expectation (E) | 3.633* | 39.734 | 108.63 | 152 | |||
df = 1, when E is little than 5, we use Yates corrected Chi squared test, χ2*
rs1386494 Hardy–Weinberg equilibrium test between ODD and control group
| Group | Genotype | ||||||
|---|---|---|---|---|---|---|---|
| AA | AG | GG | Total | χ2 | χ2* |
| |
| ODD group | 0.138 | 0.711 | |||||
| Observation (O) | 0 | 8 | 116 | 124 | |||
| Expectation (E) | 0.129* | 7.742 | 116.129 | 124 | |||
| Control group | 0.856 | 0.355 | |||||
| Observation (O) | 0 | 21 | 128 | 149 | |||
| Expectation (E) | 0.740* | 19.520 | 128.740 | 149 | |||
df = 1* when E is little than 5, we use Yates corrected Chi squared test, χ2*
rs7305115 Hardy–Weinberg equilibrium test between ODD and control group
| Group | AA | AG | GG | Total | χ2 |
|
|---|---|---|---|---|---|---|
| ODD group | 3.389 | 0.533 | ||||
| Observation (O) | 34 | 56 | 29 | 119 | ||
| Expectation (E) | 32.303 | 59.395 | 27.302 | 119 | ||
| Control group | 0.844 | 0.358 | ||||
| Observation (O) | 35 | 64 | 40 | 139 | ||
| Expectation (E) | 2.295 | 69.410 | 37.295 | 139 |
df = 1
Fig. 1Genomic structure of TPH-2, including relative location of 4 SNPs studied and linkage disequilibrium (LD) of these four SNPs in the oppositional defiant disorder (ODD) and control groups. The LD between pairwise SNPs, using D′ (left, red color) and r2 (right, gray color) values, are shown separately for cases and controls. High levels of LD are represented by increasing scale intensity from 0 to 100, as shown by the bars
Analysis of genetic linkage disequilibrium of the four loci
| SNPs | SNP2 | SNP3 | SNP4 | |||
|---|---|---|---|---|---|---|
| D′ | r2 | D′ | r2 | D′ | r2 | |
| SNP1 | 0.702 | 0.090 | 0.093 | 0.001 | 0.405 | 0.161 |
| SNP2 | 0.653 | 0.005 | 0.001 | 0.000 | ||
| SNP3 | 0.887 | 0.049 | ||||
SNP1:rs4570625; SNP2:rs11178997; SNP3:rs1386494; SNP4:rs7305115
Haplotype analysis of TPH-2 between two groups
| Haplotype distribution | Case (freq) | Control (freq) |
| Fisher | OR [95% CI] |
|---|---|---|---|---|---|
| SNP1-2 | |||||
| G-A | 1.52 (0.007) | 10.57 (0.042) | 6.281 | 0.012233* | 0.149 [0.027–0.826] |
| T-A | 40.48 (0.174) | 24.43 (0.098) | 6.083 | 0.013679* | 1.951 [1.140–3.341] |
| SNP1-2-3 | |||||
| G-A-G | 1.51 (0.007) | 10.51 (0.042) | 6.234 | 0.012562* | 0.149 [0.027–0.831] |
| T-A-G | 38.73 (0.167) | 24.00 (0.096) | 5.409 | 0.020075* | 1.896 [1.099–3.272] |
| SNP1-2-4 | |||||
| T-A-A | 22.24 (0.096) | 10.60 (0.042) | 4.981 | 0.025669* | 2.315 [1.088–4.927] |
| SNP1-2-3-4 | |||||
| T-A-G-A | 21.77 (0.094) | 7.79 (0.031) | 8.031 | 0.004617* | 3.187 [1.376–7.382] |
SNP1:rs4570625; SNP2:rs11178997; SNP3:rs1386494; SNP4:rs7305115 * P<0.05
ODD group
| Sex (1=boy;2=girl) | Age | rs4570625 | rs11178997 | rs1386494 | rs7305115 |
|---|---|---|---|---|---|
| 1 | 8 | GT | AT | GG | AG |
| 2 | 6 | TT | AT | GG | AG |
| 1 | 7 | GT | AT | GG | AG |
| 1 | 8 | TT | AT | GG | AA |
| 2 | 9 | GG | TT | GG | GG |
| 1 | 9 | GT | TT | GG | AA |
| 2 | 7 | TT | TT | GG | AA |
| 1 | 10 | TT | TT | AG | AA |
| 1 | 13 | TT | AT | GG | AG |
| 1 | 10 | GT | TT | GG | AG |
| 2 | 10 | GT | TT | GG | AG |
| 2 | 9 | TT | AT | GG | AA |
| 2 | 7 | GT | TT | GG | AG |
| 2 | 9 | GG | TT | GG | GG |
| 2 | 10 | GT | TT | AG | AG |
| 2 | 10 | TT | TT | GG | AA |
| 1 | 9 | GT | TT | GG | AG |
| 2 | 10 | GT | TT | GG | GG |
| 1 | 8 | GG | TT | GG | GG |
| 2 | 9 | GG | TT | GG | GG |
| 1 | 10 | GG | TT | GG | GG |
| 2 | 12 | TT | AA | GG | AG |
| 1 | 10 | TT | AT | GG | AA |
| 1 | 9 | GG | TT | GG | AG |
| 2 | 10 | GT | AT | GG | GG |
| 2 | 10 | GT | AT | AG | AA |
| 2 | 9 | TT | AT | GG | AA |
| 1 | 11 | TT | TT | GG | AA |
| 1 | 14 | TT | AT | GG | AG |
| 2 | 14 | TT | AA | AG | AG |
| 1 | 12 | TT | TT | GG | AA |
| 2 | 14 | GT | TT | GG | AG |
| 2 | 9 | GT | AT | GG | AG |
| 1 | 10 | GT | TT | GG | AG |
| 1 | 11 | GG | TT | GG | AG |
| 1 | 12 | GG | TT | AG | AG |
| 1 | 10 | TT | TT | GG | AG |
| 2 | 12 | GT | TT | GG | AG |
| 2 | 12 | GG | TT | GG | AG |
| 2 | 13 | GT | AT | GG | AG |
| 1 | 11 | GT | AT | AG | AG |
| 2 | 8 | GT | AT | GG | GG |
| 2 | 8 | GT | TT | GG | AG |
| 1 | 8 | GT | TT | GG | AG |
| 2 | 12 | GG | TT | GG | GG |
| 1 | 9 | GG | TT | AG | AA |
| 1 | 11 | GT | TT | GG | AG |
| 1 | 11 | GT | TT | GG | AA |
| 1 | 9 | TT | AA | GG | AG |
| 2 | 10 | TT | TT | GG | AA |
| 1 | 7 | TT | TT | GG | AA |
| 2 | 7 | GT | TT | GG | GG |
| 1 | 11 | GT | AT | GG | GG |
| 1 | 10 | GT | TT | GG | AG |
| 2 | 11 | GT | TT | GG | AG |
| 1 | 10 | TT | TT | GG | GG |
| 1 | 11 | TT | TT | GG | AA |
| 2 | 12 | GT | TT | GG | AA |
| 2 | 10 | GG | AT | GG | GG |
| 1 | 12 | GT | AT | GG | AG |
| 1 | 14 | TT | TT | GG | GG |
| 1 | 7 | GG | TT | AG | AA |
| 2 | 8 | TT | AA | GG | AA |
| 2 | 9 | GT | TT | GG | AA |
| 2 | 12 | TT | TT | GG | AA |
| 1 | 9 | TT | AT | GG | GG |
| 1 | 9 | GG | TT | GG | AG |
| 2 | 9 | GG | TT | GG | AG |
| 2 | 12 | TT | AT | GG | GG |
| 2 | 11 | TT | TT | GG | AG |
| 1 | 10 | GG | TT | GG | GG |
| 2 | 11 | GG | TT | GG | GG |
| 2 | 10 | GG | TT | GG | AG |
| 1 | 12 | GT | TT | GG | AG |
| 2 | 11 | GT | TT | GG | AG |
| 2 | 11 | GT | TT | GG | AG |
| 1 | 9 | GG | TT | GG | GG |
| 2 | 8 | GT | TT | GG | AG |
| 1 | 12 | GT | AT | GG | AA |
| 1 | 12 | GT | TT | GG | AA |
| 2 | 7 | GT | AT | GG | AG |
| 1 | 14 | TT | TT | GG | AA |
| 1 | 12 | GT | TT | GG | AA |
| 1 | 10 | GT | TT | GG | AG |
| 1 | 12 | TT | TT | GG | AA |
| 2 | 12 | GG | TT | GG | AG |
| 1 | 11 | TT | AT | GG | AA |
| 1 | 13 | TT | TT | GG | AG |
| 1 | 14 | GT | TT | GG | AG |
| 2 | 8 | GG | TT | GG | AG |
| 1 | 8 | GT | TT | GG | AG |
| 2 | 13 | GT | AT | GG | AG |
| 2 | 10 | GG | TT | GG | GG |
| 1 | 13 | GG | TT | GG | GG |
| 2 | 8 | GG | TT | GG | GG |
| 2 | 9 | TT | AA | GG | GG |
| 1 | 8 | GT | TT | GG | AG |
| 2 | 13 | TT | TT | GG | AA |
| 1 | 13 | GT | AT | GG | AG |
| 1 | 9 | TT | AT | GG | GG |
| 2 | 11 | GT | TT | GG | GG |
| 1 | 13 | GG | TT | GG | GG |
| 2 | 10 | GT | TT | GG | AA |
| 1 | 10 | TT | AA | GG | AG |
| 2 | 10 | GT | TT | GG | AG |
| 1 | 8 | GG | TT | GG | AG |
| 1 | 9 | GT | TT | GG | AA |
| 1 | 9 | TT | AT | GG | AA |
| 1 | 12 | GG | TT | GG | GG |
| 2 | 13 | TT | TT | GG | AG |
| 1 | 9 | TT | AT | GG | AG |
| 1 | 10 | GT | TT | GG | AA |
| 1 | 12 | GT | AT | GG | GG |
| 1 | 13 | GT | AT | GG | AA |
| 1 | 12 | GT | AT | GG | GG |
| 1 | 13 | TT | TT | GG | AG |
| 1 | 11 | AT | GG | AA | |
| 1 | 12 | AT | GG | AG | |
| 1 | 11 | TT | GG | AG | |
| 2 | 12 | TT | GG | ||
| 1 | 12 | TT | GG | ||
| 1 | 11 | TT | GG | ||
| 1 | 12 | TT | GG | ||
| 1 | 13 | GG |
Control group
| Sex (1=boy;2=girl) | Age | rs4570625 | rs11178997 | rs1386494 | rs7305115 |
|---|---|---|---|---|---|
| 1 | 8 | GG | TT | GG | GG |
| 2 | 7 | TT | TT | GG | AA |
| 1 | 7 | GT | TT | AG | AA |
| 2 | 9 | GT | TT | GG | AG |
| 2 | 10 | GT | TT | GG | AG |
| 1 | 9 | TT | TT | GG | AA |
| 2 | 8 | GT | TT | GG | AG |
| 1 | 8 | GT | TT | AG | AG |
| 1 | 11 | GG | TT | GG | GG |
| 1 | 9 | GG | TT | GG | GG |
| 2 | 10 | TT | AT | AG | AA |
| 2 | 10 | GG | TT | GG | GG |
| 2 | 13 | GT | TT | GG | GG |
| 1 | 11 | TT | TT | GG | AA |
| 1 | 13 | TT | TT | GG | GG |
| 2 | 7 | GT | TT | GG | AG |
| 1 | 12 | GT | TT | GG | AG |
| 1 | 14 | GT | AT | GG | AA |
| 1 | 10 | GG | TT | AG | AA |
| 1 | 12 | GT | TT | GG | GG |
| 2 | 12 | TT | AT | GG | AG |
| 2 | 11 | GG | TT | AG | AG |
| 2 | 11 | GG | TT | GG | GG |
| 2 | 9 | GG | TT | GG | AA |
| 2 | 11 | GT | TT | GG | AG |
| 2 | 12 | GT | AT | GG | AA |
| 2 | 10 | GT | TT | GG | AA |
| 1 | 13 | GT | TT | GG | AA |
| 1 | 9 | GG | TT | GG | GG |
| 1 | 9 | GT | TT | GG | AG |
| 1 | 8 | GT | TT | GG | AA |
| 2 | 7 | TT | AT | GG | AG |
| 2 | 10 | TT | TT | GG | AA |
| 1 | 11 | GT | TT | AG | AG |
| 1 | 12 | GT | TT | GG | AA |
| 2 | 10 | GG | TT | GG | GG |
| 1 | 12 | TT | AT | GG | AG |
| 2 | 11 | TT | TT | GG | GG |
| 2 | 11 | GG | TT | GG | AG |
| 2 | 11 | GG | TT | GG | AG |
| 1 | 11 | GG | TT | GG | GG |
| 2 | 12 | TT | TT | GG | GG |
| 2 | 10 | GT | AT | GG | AA |
| 1 | 9 | GG | TT | AG | AG |
| 1 | 11 | GT | TT | GG | AG |
| 2 | 12 | GG | AA | GG | AG |
| 1 | 12 | GT | AT | GG | GG |
| 2 | 12 | GT | TT | GG | AG |
| 2 | 12 | GT | TT | GG | AG |
| 2 | 9 | GT | TT | GG | GG |
| 1 | 9 | GT | TT | GG | AG |
| 1 | 11 | TT | AA | GG | AG |
| 2 | 14 | GT | TT | GG | AG |
| 1 | 12 | GG | TT | GG | AG |
| 1 | 12 | GT | AT | GG | AG |
| 1 | 12 | TT | TT | GG | AA |
| 1 | 11 | GG | TT | GG | AG |
| 1 | 12 | GT | TT | GG | AG |
| 1 | 12 | GG | AT | GG | AG |
| 1 | 12 | GT | AT | GG | GG |
| 1 | 12 | TT | TT | GG | AG |
| 1 | 12 | TT | TT | GG | AA |
| 1 | 12 | GG | AT | GG | AG |
| 1 | 11 | GT | AT | GG | AG |
| 1 | 10 | GG | TT | GG | GG |
| 2 | 11 | GT | AT | GG | GG |
| 2 | 13 | GT | TT | GG | AA |
| 2 | 13 | GT | TT | GG | AG |
| 2 | 12 | TT | AT | GG | AG |
| 2 | 13 | TT | TT | GG | GG |
| 2 | 12 | GG | TT | GG | GG |
| 2 | 11 | GT | TT | AG | AA |
| 2 | 10 | GG | TT | GG | GG |
| 1 | 10 | GT | TT | GG | AA |
| 2 | 10 | TT | AT | AG | AA |
| 2 | 11 | GT | TT | AG | AA |
| 2 | 10 | GT | AT | GG | AG |
| 2 | 10 | GT | AT | GG | AG |
| 2 | 9 | GT | TT | GG | AG |
| 2 | 10 | GG | TT | GG | GG |
| 2 | 9 | TT | AT | GG | AA |
| 2 | 10 | GT | AT | GG | GG |
| 2 | 10 | TT | TT | GG | AA |
| 1 | 8 | GT | TT | GG | AG |
| 1 | 9 | TT | TT | AG | AA |
| 2 | 10 | TT | TT | GG | GG |
| 2 | 9 | GT | TT | GG | AG |
| 1 | 10 | GT | AT | AG | AG |
| 1 | 11 | TT | TT | AG | AG |
| 1 | 12 | GT | TT | GG | AG |
| 2 | 13 | GT | TT | GG | AA |
| 2 | 10 | GG | TT | GG | AG |
| 2 | 11 | GT | AT | GG | GG |
| 1 | 11 | GT | TT | AG | AG |
| 2 | 11 | TT | TT | GG | AA |
| 1 | 11 | GT | TT | GG | AG |
| 2 | 13 | GG | TT | GG | AG |
| 1 | 13 | TT | TT | GG | AG |
| 2 | 13 | GT | TT | GG | AG |
| 1 | 11 | TT | AT | GG | AG |
| 2 | 10 | GG | TT | GG | GG |
| 2 | 8 | GT | TT | GG | AG |
| 2 | 9 | GT | TT | GG | AG |
| 1 | 9 | GT | AT | GG | GG |
| 1 | 10 | GT | AT | GG | GG |
| 1 | 11 | GT | TT | GG | AG |
| 1 | 10 | GT | AT | GG | AG |
| 1 | 11 | GT | AT | GG | AG |
| 2 | 10 | GG | TT | GG | GG |
| 1 | 9 | GT | TT | AG | AA |
| 2 | 12 | GT | AA | GG | AG |
| 2 | 12 | GT | TT | GG | AG |
| 1 | 11 | GT | TT | GG | AG |
| 1 | 7 | GT | TT | GG | AG |
| 1 | 10 | TT | TT | GG | AA |
| 1 | 8 | GG | TT | GG | GG |
| 1 | 11 | GT | TT | GG | AG |
| 2 | 13 | GG | TT | GG | GG |
| 1 | 12 | GG | AT | GG | AA |
| 1 | 10 | GG | TT | GG | AA |
| 1 | 10 | GT | TT | GG | GG |
| 2 | 8 | GT | TT | GG | AG |
| 2 | 8 | GT | AT | AG | AG |
| 1 | 12 | GG | TT | GG | GG |
| 1 | 12 | GG | TT | GG | GG |
| 2 | 7 | TT | TT | GG | AG |
| 1 | 7 | GT | TT | AG | GG |
| 2 | 9 | GT | AT | GG | GG |
| 2 | 10 | GT | AT | AG | AG |
| 1 | 9 | TT | TT | GG | AA |
| 2 | 10 | GT | AT | GG | GG |
| 1 | 8 | GT | AT | AG | GG |
| 1 | 11 | GG | TT | GG | GG |
| 1 | 9 | GG | AT | GG | AA |
| 2 | 10 | TT | TT | AG | AA |
| 2 | 10 | GT | TT | GG | GG |
| 2 | 13 | GT | TT | GG | AG |
| 1 | 11 | TT | AT | GG | AG |
| 1 | 11 | TT | TT | AG | AA |
| 2 | 7 | GT | TT | GG | |
| 1 | 12 | GT | TT | GG | |
| 1 | 11 | GT | AT | GG | |
| 1 | 10 | GT | TT | GG | |
| 1 | 12 | GT | AT | GG | |
| 1 | 12 | TT | AT | GG | |
| 2 | 11 | GT | AT | GG | |
| 1 | 11 | GT | AT | GG | |
| 2 | 9 | GG | TT | GG | |
| 1 | 11 | GT | TT | GG | |
| 2 | 12 | GT | TT | ||
| 2 | 10 | GT | TT | ||
| 1 | 8 | GT | AA |