Literature DB >> 27869814

Photometry unlocks 3D information from 2D localization microscopy data.

Christian Franke1, Markus Sauer1, Sebastian van de Linde1.   

Abstract

We developed a straightforward photometric method, temporal, radial-aperture-based intensity estimation (TRABI), that allows users to extract 3D information from existing 2D localization microscopy data. TRABI uses the accurate determination of photon numbers in different regions of the emission pattern of single emitters to generate a z-dependent photometric parameter. This method can determine fluorophore positions up to 600 nm from the focal plane and can be combined with biplane detection to further improve axial localization.

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Year:  2016        PMID: 27869814     DOI: 10.1038/nmeth.4073

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  27 in total

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Authors:  Anna Löschberger; Sebastian van de Linde; Marie-Christine Dabauvalle; Bernd Rieger; Mike Heilemann; Georg Krohne; Markus Sauer
Journal:  J Cell Sci       Date:  2012-02-01       Impact factor: 5.285

2.  Dissecting and reducing the heterogeneity of excited-state energy transport in DNA-based photonic wires.

Authors:  Mike Heilemann; Robert Kasper; Philip Tinnefeld; Markus Sauer
Journal:  J Am Chem Soc       Date:  2006-12-27       Impact factor: 15.419

3.  Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy.

Authors:  S F Gibson; F Lanni
Journal:  J Opt Soc Am A       Date:  1992-01       Impact factor: 2.129

4.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

5.  High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells.

Authors:  Sripad Ram; Prashant Prabhat; Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

6.  Three-dimensional sub-100 nm resolution fluorescence microscopy of thick samples.

Authors:  Manuel F Juette; Travis J Gould; Mark D Lessard; Michael J Mlodzianoski; Bhupendra S Nagpure; Brian T Bennett; Samuel T Hess; Joerg Bewersdorf
Journal:  Nat Methods       Date:  2008-05-11       Impact factor: 28.547

Review 7.  Fluorophore localization algorithms for super-resolution microscopy.

Authors:  Alex Small; Shane Stahlheber
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

8.  The chlamydial organism Simkania negevensis forms ER vacuole contact sites and inhibits ER-stress.

Authors:  Adrian Mehlitz; Karthika Karunakaran; Jo-Ana Herweg; Georg Krohne; Sebastian van de Linde; Elke Rieck; Markus Sauer; Thomas Rudel
Journal:  Cell Microbiol       Date:  2014-03-21       Impact factor: 3.715

9.  Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution.

Authors:  Bo Huang; Sara A Jones; Boerries Brandenburg; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2008-11-23       Impact factor: 28.547

10.  ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging.

Authors:  Martin Ovesný; Pavel Křížek; Josef Borkovec; Zdeněk Svindrych; Guy M Hagen
Journal:  Bioinformatics       Date:  2014-04-25       Impact factor: 6.937

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  17 in total

1.  Three-dimensional total-internal reflection fluorescence nanoscopy with nanometric axial resolution by photometric localization of single molecules.

Authors:  Alan M Szalai; Bruno Siarry; Jerónimo Lukin; David J Williamson; Nicolás Unsain; Alfredo Cáceres; Mauricio Pilo-Pais; Guillermo Acuna; Damián Refojo; Dylan M Owen; Sabrina Simoncelli; Fernando D Stefani
Journal:  Nat Commun       Date:  2021-01-22       Impact factor: 14.919

2.  Registration and Visualization of Correlative Super-Resolution Microscopy Data.

Authors:  Sebastian Reinhard; Sarah Aufmkolk; Markus Sauer; Sören Doose
Journal:  Biophys J       Date:  2019-05-03       Impact factor: 4.033

3.  3D Tracking-Free Approach for Obtaining 3D Super-Resolution Information in Rotationally Symmetric Biostructures.

Authors:  Andrew Ruba; Wangxi Luo; Joseph Kelich; Mark Tingey; Weidong Yang
Journal:  J Phys Chem B       Date:  2019-06-10       Impact factor: 2.991

4.  Localization-based super-resolution imaging meets high-content screening.

Authors:  Anne Beghin; Adel Kechkar; Corey Butler; Florian Levet; Marine Cabillic; Olivier Rossier; Gregory Giannone; Rémi Galland; Daniel Choquet; Jean-Baptiste Sibarita
Journal:  Nat Methods       Date:  2017-10-30       Impact factor: 28.547

5.  Photon efficient orientation estimation using polarization modulation in single-molecule localization microscopy.

Authors:  Rasmus Ø Thorsen; Christiaan N Hulleman; Bernd Rieger; Sjoerd Stallinga
Journal:  Biomed Opt Express       Date:  2022-04-21       Impact factor: 3.562

6.  Approach to map nanotopography of cell surface receptors.

Authors:  Christian Franke; Tomáš Chum; Zuzana Kvíčalová; Daniela Glatzová; Gregor Jörg Gentsch; Alvaro Rodriguez; Dominic A Helmerich; Lucas Herdly; Harsha Mavila; Otakar Frank; Tomáš Brdička; Sebastian van de Linde; Marek Cebecauer
Journal:  Commun Biol       Date:  2022-03-09

7.  ZOLA-3D allows flexible 3D localization microscopy over an adjustable axial range.

Authors:  Andrey Aristov; Benoit Lelandais; Elena Rensen; Christophe Zimmer
Journal:  Nat Commun       Date:  2018-06-19       Impact factor: 14.919

8.  Information-rich localization microscopy through machine learning.

Authors:  Taehwan Kim; Seonah Moon; Ke Xu
Journal:  Nat Commun       Date:  2019-04-30       Impact factor: 14.919

9.  Accurate localization microscopy by intrinsic aberration calibration.

Authors:  Craig R Copeland; Craig D McGray; B Robert Ilic; Jon Geist; Samuel M Stavis
Journal:  Nat Commun       Date:  2021-06-24       Impact factor: 14.919

10.  Real-time 3D single-molecule localization using experimental point spread functions.

Authors:  Yiming Li; Markus Mund; Philipp Hoess; Joran Deschamps; Ulf Matti; Bianca Nijmeijer; Vilma Jimenez Sabinina; Jan Ellenberg; Ingmar Schoen; Jonas Ries
Journal:  Nat Methods       Date:  2018-04-09       Impact factor: 28.547

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