| Literature DB >> 27863955 |
José María Fernández1, Victor de la Torre1, David Richardson2, Romina Royo3, Montserrat Puiggròs4, Valentí Moncunill4, Stamatina Fragkogianni4, Laura Clarke2, Paul Flicek2, Daniel Rico5, David Torrents6, Enrique Carrillo de Santa Pau7, Alfonso Valencia8.
Abstract
The impact of large and complex epigenomic datasets on biological insights or clinical applications is limited by the lack of accessibility by easy, intuitive, and fast tools. Here, we describe an epigenomics comparative cyber-infrastructure (EPICO), an open-access reference set of libraries to develop comparative epigenomic data portals. Using EPICO, large epigenome projects can make available their rich datasets to the community without requiring specific technical skills. As a first instance of EPICO, we implemented the BLUEPRINT Data Analysis Portal (BDAP). BDAP provides a desktop for the comparative analysis of epigenomes of hematopoietic cell types based on results, such as the position of epigenetic features, from basic analysis pipelines. The BDAP interface facilitates interactive exploration of genomic regions, genes, and pathways in the context of differentiation of hematopoietic lineages. This work represents initial steps toward broadly accessible integrative analysis of epigenomic data across international consortia. EPICO can be accessed at https://github.com/inab, and BDAP can be accessed at http://blueprint-data.bsc.es. Copyright ÂEntities:
Keywords: BLUEPRINT Data Analysis Portal; BLUEPRINT epigenomes; International Human Epigenomes Consortium; bioinformatics; cyber-infrastructure; epigenomic data mining tools; epigenomic data visualization; epigenomics; hematopoiesis; leukemia
Mesh:
Year: 2016 PMID: 27863955 PMCID: PMC5919098 DOI: 10.1016/j.cels.2016.10.021
Source DB: PubMed Journal: Cell Syst ISSN: 2405-4712 Impact factor: 10.304