Literature DB >> 27862518

An automated method to evaluate the enzyme kinetics of β-glucosidases.

Pavel Klimeš1, Pavel Mazura1, Dušan Turek1, Břetislav Brzobohatý1.   

Abstract

Enzyme kinetic measurements are important for the characterization and engineering of biocatalysts, with applications in a wide range of research fields. The measurement of initial reaction velocity is usually slow and laborious, which motivated us to explore the possibilities for automating this process. Our model enzyme is the maize β-glucosidase Zm-p60.1. Zm-p60.1 plays a significant role in plant growth and development by regulating levels of the active plant hormone cytokinin. Zm-p60.1 belongs to a wide group of hydrolytic enzymes. Members of this group hydrolyze several different types of glucosides, releasing glucose as a secondary product. Enzyme kinetic measurements using artificial substrates are well established, but burdensome and time-consuming. Thus, they are a suitable target for process automation. Simple optical methods for enzyme kinetic measurements using natural substrates are often impossible given the optical properties of the enzymatic reaction products. However, we have developed an automated method based on glucose detection, as glucose is released from all substrates of glucosidase reactions. The presented method can obtain 24 data points from up to 15 substrate concentrations to precisely describe the enzyme kinetics. The combination of an automated liquid handling process with assays that have been optimized for measuring the initial hydrolysis velocity of β-glucosidases yields two distinct methods that are faster, cheaper, and more accurate than the established protocols.
© 2016 The Protein Society.

Entities:  

Keywords:  enzyme kinetics; fluorescence; glucose; glycoside hydrolases; lab automation; β-glucosidase

Mesh:

Substances:

Year:  2016        PMID: 27862518      PMCID: PMC5275727          DOI: 10.1002/pro.3078

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  15 in total

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Review 4.  Nanomaterials with enzyme-like characteristics (nanozymes): next-generation artificial enzymes.

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Journal:  Chem Soc Rev       Date:  2013-07-21       Impact factor: 54.564

5.  A new, sensitive method for enzyme kinetic studies of scarce glucosides.

Authors:  Pavel Mazura; Radka Fohlerová; Bretislav Brzobohatý; Nagavalli S Kiran; Lubomír Janda
Journal:  J Biochem Biophys Methods       Date:  2006-05-02

Review 6.  Automated synthesis of oligosaccharides as a basis for drug discovery.

Authors:  Peter H Seeberger; Daniel B Werz
Journal:  Nat Rev Drug Discov       Date:  2005-09       Impact factor: 84.694

7.  Fluorometric sucrose evaluation for sugar beet.

Authors:  Daniele Trebbi; J Mitchell McGrath
Journal:  J Agric Food Chem       Date:  2004-11-17       Impact factor: 5.279

8.  Insights into the functional architecture of the catalytic center of a maize beta-glucosidase Zm-p60.1.

Authors:  J Zouhar; J Vévodová; J Marek; J Damborský; X D Su; B Brzobohatý
Journal:  Plant Physiol       Date:  2001-11       Impact factor: 8.340

9.  Release of active cytokinin by a beta-glucosidase localized to the maize root meristem.

Authors:  B Brzobohatý; I Moore; P Kristoffersen; L Bako; N Campos; J Schell; K Palme
Journal:  Science       Date:  1993-11-12       Impact factor: 47.728

10.  Functional analysis of the aglycone-binding site of the maize beta-glucosidase Zm-p60.1.

Authors:  Radka Dopitová; Pavel Mazura; Lubomír Janda; Radka Chaloupková; Petr Jerábek; Jirí Damborský; Tomás Filipi; Nagavalli S Kiran; Bretislav Brzobohatý
Journal:  FEBS J       Date:  2008-10-30       Impact factor: 5.542

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