Literature DB >> 27860084

Electron Cryo-microscopy as a Tool for Structure-Based Drug Development.

Felipe Merino1, Stefan Raunser1.   

Abstract

For decades, X-ray crystallography and NMR have been the most important techniques for studying the atomic structure of macromolecules. However, as a result of size, instability, low yield, and other factors, many macromolecules are difficult to crystallize or unsuitable for NMR studies. Electron cryo-microscopy (cryo-EM) does not depend on crystals and has therefore been the method of choice for many macromolecular complexes that cannot be crystallized, but atomic resolution has mostly been beyond its reach. A new generation of detectors that are capable of sensing directly the incident electrons has recently revolutionized the field, with structures of macromolecules now routinely being solved to near-atomic resolution. In this review, we summarize some of the most recent examples of high-resolution cryo-EM structures. We put particular emphasis on proteins with pharmacological relevance that have traditionally been inaccessible to crystallography. Furthermore, we discuss examples where interactions with small molecules have been fully characterized at atomic resolution. Finally, we stress the current limits of cryo-EM, and methodological issues related to its usage as a tool for drug development.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  cryo-EM; drug development; electron microscopy; pharmacological targets; structural biology

Mesh:

Substances:

Year:  2017        PMID: 27860084     DOI: 10.1002/anie.201608432

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  11 in total

Review 1.  Broadening access to cryoEM through centralized facilities.

Authors:  Christina M Zimanyi; Mykhailo Kopylov; Clinton S Potter; Bridget Carragher; Edward T Eng
Journal:  Trends Biochem Sci       Date:  2022-02       Impact factor: 13.807

2.  Presence and structure-activity relationship of intrinsically disordered regions across mucins.

Authors:  Joseph Carmicheal; Pranita Atri; Sunandini Sharma; Sushil Kumar; Ramakanth Chirravuri Venkata; Prakash Kulkarni; Ravi Salgia; Dario Ghersi; Sukhwinder Kaur; Surinder K Batra
Journal:  FASEB J       Date:  2020-01-05       Impact factor: 5.191

3.  [Progress in filters for denoising cryo-electron microscopy images].

Authors:  X R Huang; S Li; S Gao
Journal:  Beijing Da Xue Xue Bao Yi Xue Ban       Date:  2021-03-03

4.  High-resolution cryo-EM proteasome structures in drug development.

Authors:  Edward P Morris; Paula C A da Fonseca
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-05-31       Impact factor: 7.652

Review 5.  Biophysical Approaches Facilitate Computational Drug Discovery for ATP-Binding Cassette Proteins.

Authors:  Steven V Molinski; Zoltán Bozóky; Surtaj H Iram; Saumel Ahmadi
Journal:  Int J Med Chem       Date:  2017-03-19

Review 6.  Electron cryomicroscopy as a powerful tool in biomedical research.

Authors:  Dennis Quentin; Stefan Raunser
Journal:  J Mol Med (Berl)       Date:  2018-05-05       Impact factor: 4.599

7.  The role of NMR in leveraging dynamics and entropy in drug design.

Authors:  Abhinav Dubey; Koh Takeuchi; Mikhail Reibarkh; Haribabu Arthanari
Journal:  J Biomol NMR       Date:  2020-07-27       Impact factor: 2.835

8.  Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3).

Authors:  Wei Lin; Kalyan Das; David Degen; Abhishek Mazumder; Diego Duchi; Dongye Wang; Yon W Ebright; Richard Y Ebright; Elena Sineva; Matthew Gigliotti; Aashish Srivastava; Sukhendu Mandal; Yi Jiang; Yu Liu; Ruiheng Yin; Zhening Zhang; Edward T Eng; Dennis Thomas; Stefano Donadio; Haibo Zhang; Changsheng Zhang; Achillefs N Kapanidis; Richard H Ebright
Journal:  Mol Cell       Date:  2018-03-29       Impact factor: 17.970

Review 9.  Advances in methods for atomic resolution macromolecular structure determination.

Authors:  Michael C Thompson; Todd O Yeates; Jose A Rodriguez
Journal:  F1000Res       Date:  2020-07-02

10.  TranSPHIRE: automated and feedback-optimized on-the-fly processing for cryo-EM.

Authors:  Markus Stabrin; Fabian Schoenfeld; Thorsten Wagner; Sabrina Pospich; Christos Gatsogiannis; Stefan Raunser
Journal:  Nat Commun       Date:  2020-11-11       Impact factor: 14.919

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