Literature DB >> 27860069

Macromolecular and Small Molecular Crowding Have Similar Effects on α-Synuclein Structure.

Jia Bai1,2, Maili Liu1, Gary J Pielak3, Conggang Li1.   

Abstract

The intracellular milieu contains upwards of 400 g of macromolecules per liter. This crowding is thought to have a larger influence on intrinsically disordered proteins, whose chains are expanded, than on compact globular proteins. Classic theories of macromolecular crowding predict that increasing excluded volume effects will lead disordered proteins to compaction, and a great deal of data, from both simulation and experiments support this idea. We used nuclear magnetic resonance, circular dichroism, and fluorescence spectroscopies to characterize the structure and fibrillation of α-synuclein, an intrinsically disordered protein implicated in Parkinson's disease, using Ficoll70, its monomer sucrose and bovine serum albumin as crowding agents. Surprisingly, volume exclusion induced by high concentrations of macromolecules may not be the main reason for the compaction of α-synuclein. Our results indicate that all aspects crowding must be considered to understand protein conformation under crowded conditions.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; circular dichroism; macromolecular crowding; protein structure; α-synuclein

Mesh:

Substances:

Year:  2016        PMID: 27860069     DOI: 10.1002/cphc.201601097

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  16 in total

Review 1.  Features of molecular recognition of intrinsically disordered proteins via coupled folding and binding.

Authors:  Jing Yang; Meng Gao; Junwen Xiong; Zhengding Su; Yongqi Huang
Journal:  Protein Sci       Date:  2019-09-04       Impact factor: 6.725

Review 2.  Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo.

Authors:  Alexander V Fonin; April L Darling; Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2018-07-31       Impact factor: 9.261

3.  Atomistic Modeling of Intrinsically Disordered Proteins Under Polyethylene Glycol Crowding: Quantitative Comparison with Experimental Data and Implication of Protein-Crowder Attraction.

Authors:  Valery Nguemaha; Sanbo Qin; Huan-Xiang Zhou
Journal:  J Phys Chem B       Date:  2018-10-03       Impact factor: 2.991

4.  Intrinsically Disordered Protein Exhibits Both Compaction and Expansion under Macromolecular Crowding.

Authors:  Anthony Banks; Sanbo Qin; Kevin L Weiss; Christopher B Stanley; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2018-03-13       Impact factor: 4.033

Review 5.  Molecular simulations of cellular processes.

Authors:  Fabio Trovato; Giordano Fumagalli
Journal:  Biophys Rev       Date:  2017-11-28

6.  Using a FRET Library with Multiple Probe Pairs To Drive Monte Carlo Simulations of α-Synuclein.

Authors:  John J Ferrie; Conor M Haney; Jimin Yoon; Buyan Pan; Yi-Chih Lin; Zahra Fakhraai; Elizabeth Rhoades; Abhinav Nath; E James Petersson
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

Review 7.  Progress on Crowding Effect in Cell-like Structures.

Authors:  Chao Li; Xiangxiang Zhang; Mingdong Dong; Xiaojun Han
Journal:  Membranes (Basel)       Date:  2022-06-03

Review 8.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

9.  Crowding in Cellular Environments at an Atomistic Level from Computer Simulations.

Authors:  Michael Feig; Isseki Yu; Po-Hung Wang; Grzegorz Nawrocki; Yuji Sugita
Journal:  J Phys Chem B       Date:  2017-07-12       Impact factor: 2.991

10.  Crowding Effects on the Structure and Dynamics of the Intrinsically Disordered Nuclear Chromatin Protein NUPR1.

Authors:  Alessio Bonucci; Martina Palomino-Schätzlein; Paula Malo de Molina; Arantxa Arbe; Roberta Pierattelli; Bruno Rizzuti; Juan L Iovanna; José L Neira
Journal:  Front Mol Biosci       Date:  2021-07-05
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