Literature DB >> 29119630

Mycobacterium tuberculosis Rv3651 is a triple sensor-domain protein.

Jan Abendroth1,2, Andrew Frando3,4, Isabelle Q Phan2,3, Bart L Staker2,3, Peter J Myler2,3,4,5, Thomas E Edwards1,2, Christoph Grundner3,4.   

Abstract

The genome of the human pathogen Mycobacterium tuberculosis (Mtb) encodes ∼4,400 proteins, but one third of them have unknown functions. We solved the crystal structure of Rv3651, a hypothetical protein with no discernible similarity to proteins with known function. Rv3651 has a three-domain architecture that combines one cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA (GAF) domain and two Per-ARNT-Sim (PAS) domains. GAF and PAS domains are sensor domains that are typically linked to signaling effector molecules. Unlike these sensor-effector proteins, Rv3651 is an unusual sensor domain-only protein with highly divergent sequence. The structure suggests that Rv3651 integrates multiple different signals and serves as a scaffold to facilitate signal transfer.
© 2017 The Protein Society.

Entities:  

Keywords:  GAF domain; Mycobacterium tuberculosis; PAS domain; proteins of unknown function

Mesh:

Substances:

Year:  2017        PMID: 29119630      PMCID: PMC5775179          DOI: 10.1002/pro.3343

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  21 in total

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Authors:  Jonathan T Henry; Sean Crosson
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Authors:  V Anantharaman; E V Koonin; L Aravind
Journal:  J Mol Biol       Date:  2001-04-13       Impact factor: 5.469

Review 4.  Structure and signaling mechanism of Per-ARNT-Sim domains.

Authors:  Andreas Möglich; Rebecca A Ayers; Keith Moffat
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

5.  The Pfam protein families database.

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Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

Review 6.  GAF domains: cyclic nucleotides come full circle.

Authors:  James H Hurley
Journal:  Sci STKE       Date:  2003-01-07

7.  Gene design, cloning and protein-expression methods for high-value targets at the Seattle Structural Genomics Center for Infectious Disease.

Authors:  Amy Raymond; Taryn Haffner; Nathan Ng; Don Lorimer; Bart Staker; Lance Stewart
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-08-13

8.  JPred4: a protein secondary structure prediction server.

Authors:  Alexey Drozdetskiy; Christian Cole; James Procter; Geoffrey J Barton
Journal:  Nucleic Acids Res       Date:  2015-04-16       Impact factor: 16.971

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  1 in total

1.  Structural diversity in the Mycobacteria DUF3349 superfamily.

Authors:  Garry W Buchko; Jan Abendroth; John I Robinson; Isabelle Q Phan; Peter J Myler; Thomas E Edwards
Journal:  Protein Sci       Date:  2019-11-21       Impact factor: 6.725

  1 in total

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