Literature DB >> 27847347

A Comparative evaluation of voxel-based spatial mapping in diffusion tensor imaging.

Ryan P Cabeen1, Mark E Bastin2, David H Laidlaw1.   

Abstract

This paper presents a comparative evaluation of methods for automated voxel-based spatial mapping in diffusion tensor imaging studies. Such methods are an essential step in computational pipelines and provide anatomically comparable measurements across a population in atlas-based studies. To better understand their strengths and weaknesses, we tested a total of eight methods for voxel-based spatial mapping in two types of diffusion tensor templates. The methods were evaluated with respect to scan-rescan reliability and an application to normal aging. The methods included voxel-based analysis with and without smoothing, two types of region-based analysis, and combinations thereof with skeletonization. The templates included a study-specific template created with DTI-TK and the IIT template serving as a standard template. To control for other factors in the pipeline, the experiments used a common dataset, acquired at 1.5T with a single shell high angular resolution diffusion MR imaging protocol, and tensor-based spatial normalization with DTI-TK. Scan-rescan reliability was assessed using the coefficient of variation (CV) and intraclass correlation (ICC) in eight subjects with three scans each. Sensitivity to normal aging was assessed in a population of 80 subjects aged 25-65 years old, and methods were compared with respect to the anatomical agreement of significant findings and the R2 of the associated models of fractional anisotropy. The results show that reliability depended greatly on the method used for spatial mapping. The largest differences in reliability were found when adding smoothing and comparing voxel-based and region-based analyses. Skeletonization and template type were found to have either a small or negligible effect on reliability. The aging results showed agreement among the methods in nine brain areas, with some methods showing more sensitivity than others. Skeletonization and smoothing were not major factors affecting sensitivity to aging, but the standard template showed higher R2 in several conditions. A structural comparison of the templates showed that large deformations between them may be related to observed differences in patterns of significant voxels. Most areas showed significantly higher R2 with voxel-based analysis, particularly when clusters were smaller than the available regions-of-interest. Looking forward, these results can potentially help to interpret results from existing white matter imaging studies, as well as provide a resource to help in planning future studies to maximize reliability and sensitivity with regard to the scientific goals at hand.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Diffusion tensor imaging; Normal aging; Region-based analysis; Reliability; Reproducibility; Skeleton-based analysis; Spatial mapping; Voxel-based analysis; White matter

Mesh:

Year:  2016        PMID: 27847347      PMCID: PMC5322202          DOI: 10.1016/j.neuroimage.2016.11.020

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  71 in total

1.  Multicenter stability of diffusion tensor imaging measures: a European clinical and physical phantom study.

Authors:  Stefan J Teipel; Sigrid Reuter; Bram Stieltjes; Julio Acosta-Cabronero; Ulrike Ernemann; Andreas Fellgiebel; Massimo Filippi; Giovanni Frisoni; Frank Hentschel; Frank Jessen; Stefan Klöppel; Thomas Meindl; Petra J W Pouwels; Karl-Heinz Hauenstein; Harald Hampel
Journal:  Psychiatry Res       Date:  2011-11-09       Impact factor: 3.222

2.  Replicability of diffusion tensor imaging measurements of fractional anisotropy and trace in brain.

Authors:  Adolf Pfefferbaum; Elfar Adalsteinsson; Edith V Sullivan
Journal:  J Magn Reson Imaging       Date:  2003-10       Impact factor: 4.813

3.  Reproducibility of quantitative tractography methods applied to cerebral white matter.

Authors:  Setsu Wakana; Arvind Caprihan; Martina M Panzenboeck; James H Fallon; Michele Perry; Randy L Gollub; Kegang Hua; Jiangyang Zhang; Hangyi Jiang; Prachi Dubey; Ari Blitz; Peter van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2007-03-20       Impact factor: 6.556

4.  Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template.

Authors:  Susumu Mori; Kenichi Oishi; Hangyi Jiang; Li Jiang; Xin Li; Kazi Akhter; Kegang Hua; Andreia V Faria; Asif Mahmood; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa Neto; Alan Evans; Jiangyang Zhang; Hao Huang; Michael I Miller; Peter van Zijl; John Mazziotta
Journal:  Neuroimage       Date:  2008-01-03       Impact factor: 6.556

Review 5.  Diffusion tensor imaging (DTI)-based white matter mapping in brain research: a review.

Authors:  Yaniv Assaf; Ofer Pasternak
Journal:  J Mol Neurosci       Date:  2008       Impact factor: 3.444

6.  Neuropsychiatric applications of DTI - a review.

Authors:  K O Lim; J A Helpern
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

Review 7.  Applications of diffusion-weighted and diffusion tensor MRI to white matter diseases - a review.

Authors:  Mark A Horsfield; Derek K Jones
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

8.  Development of a high angular resolution diffusion imaging human brain template.

Authors:  Anna Varentsova; Shengwei Zhang; Konstantinos Arfanakis
Journal:  Neuroimage       Date:  2014-01-15       Impact factor: 6.556

Review 9.  White matter atlases based on diffusion tensor imaging.

Authors:  Susumu Mori; Kenichi Oishi; Andreia V Faria
Journal:  Curr Opin Neurol       Date:  2009-08       Impact factor: 5.710

10.  Reproducibility of quantitative cerebral T2 relaxometry, diffusion tensor imaging, and 1H magnetic resonance spectroscopy at 3.0 Tesla.

Authors:  Jacobus F A Jansen; M Eline Kooi; Alfons G H Kessels; Klaas Nicolay; Walter H Backes
Journal:  Invest Radiol       Date:  2007-06       Impact factor: 6.016

View more
  11 in total

1.  Preliminary mapping of the structural effects of age in pediatric bipolar disorder with multimodal MR imaging.

Authors:  Ryan P Cabeen; David H Laidlaw; Amanda Ruggieri; Daniel P Dickstein
Journal:  Psychiatry Res Neuroimaging       Date:  2018-01-10       Impact factor: 2.376

2.  Acute White-Matter Abnormalities in Sports-Related Concussion: A Diffusion Tensor Imaging Study from the NCAA-DoD CARE Consortium.

Authors:  Sourajit Mitra Mustafi; Jaroslaw Harezlak; Kevin M Koch; Andrew S Nencka; Timothy B Meier; John D West; Christopher C Giza; John P DiFiori; Kevin M Guskiewicz; Jason P Mihalik; Stephen M LaConte; Stefan M Duma; Steven P Broglio; Andrew J Saykin; Michael McCrea; Thomas W McAllister; Yu-Chien Wu
Journal:  J Neurotrauma       Date:  2018-08-15       Impact factor: 5.269

3.  The SACT Template: A Human Brain Diffusion Tensor Template for School-age Children.

Authors:  Congying Chu; Haoran Guan; Sangma Xie; Yanpei Wang; Jie Luo; Gai Zhao; Zhiying Pan; Mingming Hu; Weiwei Men; Shuping Tan; Jia-Hong Gao; Shaozheng Qin; Yong He; Lingzhong Fan; Qi Dong; Sha Tao
Journal:  Neurosci Bull       Date:  2022-01-29       Impact factor: 5.271

4.  Perivascular space fluid contributes to diffusion tensor imaging changes in white matter.

Authors:  Farshid Sepehrband; Ryan P Cabeen; Jeiran Choupan; Giuseppe Barisano; Meng Law; Arthur W Toga
Journal:  Neuroimage       Date:  2019-04-30       Impact factor: 6.556

5.  Evaluation of standardized and study-specific diffusion tensor imaging templates of the adult human brain: Template characteristics, spatial normalization accuracy, and detection of small inter-group FA differences.

Authors:  Shengwei Zhang; Konstantinos Arfanakis
Journal:  Neuroimage       Date:  2018-01-28       Impact factor: 6.556

6.  Tractography Processing with the Sparse Closest Point Transform.

Authors:  Ryan P Cabeen; Arthur W Toga; David H Laidlaw
Journal:  Neuroinformatics       Date:  2021-04

7.  Nonparenchymal fluid is the source of increased mean diffusivity in preclinical Alzheimer's disease.

Authors:  Farshid Sepehrband; Ryan P Cabeen; Giuseppe Barisano; Nasim Sheikh-Bahaei; Jeiran Choupan; Meng Law; Arthur W Toga
Journal:  Alzheimers Dement (Amst)       Date:  2019-04-22

8.  Regionconnect: Rapidly extracting standardized brain connectivity information in voxel-wise neuroimaging studies.

Authors:  Xiaoxiao Qi; Konstantinos Arfanakis
Journal:  Neuroimage       Date:  2020-10-16       Impact factor: 6.556

9.  Development of brain atlases for early-to-middle adolescent collision-sport athletes.

Authors:  Yukai Zou; Wenbin Zhu; Ho-Ching Yang; Ikbeom Jang; Nicole L Vike; Diana O Svaldi; Trey E Shenk; Victoria N Poole; Evan L Breedlove; Gregory G Tamer; Larry J Leverenz; Ulrike Dydak; Eric A Nauman; Yunjie Tong; Thomas M Talavage; Joseph V Rispoli
Journal:  Sci Rep       Date:  2021-03-19       Impact factor: 4.379

10.  Tractography in Type 2 Diabetes Mellitus With Subjective Memory Complaints: A Diffusion Tensor Imaging Study.

Authors:  Jun Wang; Laiyang Ma; Guangyao Liu; Wenjuan Bai; Kai Ai; Pengfei Zhang; Wanjun Hu; Jing Zhang
Journal:  Front Neurosci       Date:  2022-04-06       Impact factor: 5.152

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.