| Literature DB >> 27840681 |
Derek Mendez1, Herschel Watkins1, Shenglan Qiao2, Kevin S Raines1, Thomas J Lane3, Gundolf Schenk1, Garrett Nelson4, Ganesh Subramanian4, Kensuke Tono5, Yasumasa Joti5, Makina Yabashi6, Daniel Ratner3, Sebastian Doniach7.
Abstract
During X-ray exposure of a molecular solution, photons scattered from the same molecule are correlated. If molecular motion is insignificant during exposure, then differences in momentum transfer between correlated photons are direct measurements of the molecular structure. In conventional small- and wide-angle solution scattering, photon correlations are ignored. This report presents advances in a new biomolecular structural analysis technique, correlated X-ray scattering (CXS), which uses angular intensity correlations to recover hidden structural details from molecules in solution. Due to its intense rapid pulses, an X-ray free electron laser (XFEL) is an excellent tool for CXS experiments. A protocol is outlined for analysis of a CXS data set comprising a total of half a million X-ray exposures of solutions of small gold nanoparticles recorded at the Spring-8 Ångström Compact XFEL facility (SACLA). From the scattered intensities and their correlations, two populations of nanoparticle domains within the solution are distinguished: small twinned, and large probably non-twinned domains. It is shown analytically how, in a solution measurement, twinning information is only accessible via intensity correlations, demonstrating how CXS reveals atomic-level information from a disordered solution of like molecules.Entities:
Keywords: XFELs; angular photon correlations; correlated X-ray scattering; gold nanoparticles; solution diffraction
Year: 2016 PMID: 27840681 PMCID: PMC5094444 DOI: 10.1107/S2052252516013956
Source DB: PubMed Journal: IUCrJ ISSN: 2052-2525 Impact factor: 4.769
Figure 1Schematic diagrams of the experimental setup and geometry. (a) X-ray pulses (orange) exposing a solution of gold nanoparticles. Shown in bright green is the {111} Bragg ring. Also shown are two positions along the Bragg ring, and , separated by an angle Δ = π. Artwork courtesy of Gregory M. Stewart (SLAC). (b) The elastic scattering geometry corresponding to the case when Δ = π. Note that ψmax < π at wide angles.
Figure 2Separation of bright Bragg spots in the angular intensity profile. (a) The {111} Bragg ring intensity of a single snapshot exposure i. Highlighted in green are the brightest intensities. (b) The same as (a), but the bright Bragg spots are removed, leaving behind the moderate intensity, which forms a relatively noisy signal. The angular gaps in (a) and (b) represent gaps between the detector pixel panels. The variation in counts periodic in π is due to beam polarization. Other non-uniformities occur in the analysis, including detector shadows (Fig. S4 in the supporting information). We correlate the bright and moderate intensities separately (the results are shown in Fig. 3 ▸).
Figure 3Simulated and measured angular correlation profiles of the {111} Bragg ring. (a) Simulated CXS for the gold decahedron in Fig. 5 ▸(b). For details of the simulation see section S2 in the supporting information. (b) The mirror-symmetric difference correlation of the moderate intensities, , which imposes Friedel symmetry. These data represent an average of 1.6 × 105 exposures. (c) The Gaussian fit G(cosψ) (Appendix C ) fit directly to . The horizontal line marks an SNR (Appendix D ) value of 2.5. There are many small peaks with a low SNR which are likely noise. (d) The mirror-symmetric difference correlation of the bright Bragg intensities, . The absence of pronounced peaks at cosψ = and indicates that this signal possibly arises from a population of non-twinned scattering domains. Also, the relatively sharp width of the CXS peaks at cosψ = indicates that the corresponding NP domains are larger than the twinned domains which produced the CXS shown in part (b). Vertical dashed lines (red) are the predicted CXS signal from the NNT model, as well as other significant CXS signals.
Figure 4Signal-to-noise scaling. The estimated SNR of four significant CXS peaks in are plotted as a function of N, the number of averaged snapshot exposures. The SNR is defined in Appendix D . The error bar shown is one standard deviation of the measurement.
Figure 5CXS of the {111} Bragg ring simulated for single- and multi-domain NP models. (a) The simulated CXS for a non-twinned cuboctahedron gold NP atomic model (section S2 in the supporting information). Note that, for single-domain gold particles, one would only expect a CXS signal at cosψ = , corresponding to the {111} interplanar angles of an f.c.c. crystal. We observed this CXS signal from the large domains in our sample. (b) The simulated CXS for a nearest-neighbor tetrahedron (NNT, outlined in dashed blue). Multi-twinned particles, such as the decahedron shown here, are composed of several NNT units. The angular gap in the decahedron results because the tetrahedra are each close-packed f.c.c. domains (Yang, 1979 ▸). The twinning gives rise to additional CXS peaks. We observed this signal from the small twinned NP domains.