Literature DB >> 27840389

RNA-based gene circuits for cell regulation.

Peter Karagiannis1, Yoshihiko Fujita, Hirohide Saito.   

Abstract

A major goal of synthetic biology is to control cell behavior. RNA-mediated genetic switches (RNA switches) are devices that serve this purpose, as they can control gene expressions in response to input signals. In general, RNA switches consist of two domains: an aptamer domain, which binds to an input molecule, and an actuator domain, which controls the gene expression. An input binding to the aptamer can cause the actuator to alter the RNA structure, thus changing access to translation machinery. The assembly of multiple RNA switches has led to complex gene circuits for cell therapies, including the selective killing of pathological cells and purification of cell populations. The inclusion of RNA binding proteins, such as L7Ae, increases the repertoire and precision of the circuit. In this short review, we discuss synthetic RNA switches for gene regulation and their potential therapeutic applications.

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Year:  2016        PMID: 27840389      PMCID: PMC5328788          DOI: 10.2183/pjab.92.412

Source DB:  PubMed          Journal:  Proc Jpn Acad Ser B Phys Biol Sci        ISSN: 0386-2208            Impact factor:   3.493


  80 in total

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Authors:  Alexander S Mironov; Ivan Gusarov; Ruslan Rafikov; Lubov Errais Lopez; Konstantin Shatalin; Rimma A Kreneva; Daniel A Perumov; Evgeny Nudler
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

Review 2.  MicroRNAs: small RNAs with a big role in gene regulation.

Authors:  Lin He; Gregory J Hannon
Journal:  Nat Rev Genet       Date:  2004-07       Impact factor: 53.242

Review 3.  RNA Interference (RNAi)-Based Therapeutics: Delivering on the Promise?

Authors:  Maggie L Bobbin; John J Rossi
Journal:  Annu Rev Pharmacol Toxicol       Date:  2016       Impact factor: 13.820

4.  In vivo delivery of a microRNA-regulated transgene induces antigen-specific regulatory T cells and promotes immunologic tolerance.

Authors:  Andrea Annoni; Brian D Brown; Alessio Cantore; Lucia Sergi Sergi; Luigi Naldini; Maria-Grazia Roncarolo
Journal:  Blood       Date:  2009-12-10       Impact factor: 22.113

5.  Controlling gene expression in living cells through small molecule-RNA interactions.

Authors:  G Werstuck; M R Green
Journal:  Science       Date:  1998-10-09       Impact factor: 47.728

6.  Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.

Authors:  Wade Winkler; Ali Nahvi; Ronald R Breaker
Journal:  Nature       Date:  2002-10-16       Impact factor: 49.962

7.  A general design strategy for protein-responsive riboswitches in mammalian cells.

Authors:  Simon Ausländer; Pascal Stücheli; Charlotte Rehm; David Ausländer; Jörg S Hartig; Martin Fussenegger
Journal:  Nat Methods       Date:  2014-10-05       Impact factor: 28.547

8.  Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems.

Authors:  Yvonne Y Chen; Michael C Jensen; Christina D Smolke
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

9.  Dicer, Drosha, and outcomes in patients with ovarian cancer.

Authors:  William M Merritt; Yvonne G Lin; Liz Y Han; Aparna A Kamat; Whitney A Spannuth; Rosemarie Schmandt; Diana Urbauer; Len A Pennacchio; Jan-Fang Cheng; Alpa M Nick; Michael T Deavers; Alexandra Mourad-Zeidan; Hua Wang; Peter Mueller; Marc E Lenburg; Joe W Gray; Samuel Mok; Michael J Birrer; Gabriel Lopez-Berestein; Robert L Coleman; Menashe Bar-Eli; Anil K Sood
Journal:  N Engl J Med       Date:  2008-12-18       Impact factor: 91.245

10.  Quantitative and simultaneous translational control of distinct mammalian mRNAs.

Authors:  Kei Endo; James A Stapleton; Karin Hayashi; Hirohide Saito; Tan Inoue
Journal:  Nucleic Acids Res       Date:  2013-05-18       Impact factor: 16.971

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2.  Synthetic Biology Meets Machine Learning.

Authors:  Brendan Fu-Long Sieow; Ryan De Sotto; Zhi Ren Darren Seet; In Young Hwang; Matthew Wook Chang
Journal:  Methods Mol Biol       Date:  2023

3.  Scaling up genetic circuit design for cellular computing: advances and prospects.

Authors:  Yiyu Xiang; Neil Dalchau; Baojun Wang
Journal:  Nat Comput       Date:  2018-10-05       Impact factor: 1.690

Review 4.  Biomaterial-based delivery systems of nucleic acid for regenerative research and regenerative therapy.

Authors:  Jun-Ichiro Jo; Jian-Qing Gao; Yasuhiko Tabata
Journal:  Regen Ther       Date:  2019-07-11       Impact factor: 3.419

5.  Xeno-free induced pluripotent stem cell-derived neural progenitor cells for in vivo applications.

Authors:  Ruslan Rust; Rebecca Z Weber; Melanie Generali; Debora Kehl; Chantal Bodenmann; Daniela Uhr; Debora Wanner; Kathrin J Zürcher; Hirohide Saito; Simon P Hoerstrup; Roger M Nitsch; Christian Tackenberg
Journal:  J Transl Med       Date:  2022-09-16       Impact factor: 8.440

6.  Increasing the length of poly-pyrimidine bulges broadens RNA conformational ensembles with minimal impact on stacking energetics.

Authors:  Dawn K Merriman; Jiayi Yuan; Honglue Shi; Ananya Majumdar; Daniel Herschlag; Hashim M Al-Hashimi
Journal:  RNA       Date:  2018-07-16       Impact factor: 4.942

Review 7.  From Endogenous to Synthetic microRNA-Mediated Regulatory Circuits: An Overview.

Authors:  Elsi Ferro; Chiara Enrico Bena; Silvia Grigolon; Carla Bosia
Journal:  Cells       Date:  2019-11-29       Impact factor: 6.600

  7 in total

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