Literature DB >> 27838743

Intrinsic disorder in proteins involved in amyotrophic lateral sclerosis.

Nikolas Santamaria1, Marwa Alhothali1, Maria Harreguy Alfonso1, Leonid Breydo1,2, Vladimir N Uversky3,4,5.   

Abstract

Five structurally and functionally different proteins, an enzyme superoxide dismutase 1 (SOD1), a TAR-DNA binding protein-43 (TDP-43), an RNA-binding protein FUS, a cofilin-binding protein C9orf72, and polypeptides generated as a result of its intronic hexanucleotide expansions, and to lesser degree actin-binding profilin-1 (PFN1), are considered to be the major drivers of amyotrophic lateral sclerosis. One of the features common to these proteins is the presence of significant levels of intrinsic disorder. The goal of this study is to consider these neurodegeneration-related proteins from the intrinsic disorder perspective. To this end, we employed a broad set of computational tools for intrinsic disorder analysis and conducted intensive literature search to gain information on the structural peculiarities of SOD1, TDP-43, FUS, C9orf72, and PFN1 and their intrinsic disorder predispositions, and the roles of intrinsic disorder in their normal and pathological functions.

Entities:  

Keywords:  Amyotrophic lateral sclerosis; Binding-induced folding; FUS; Intrinsically disordered proteins; Neurodegeneration; Polymorphism; Posttranslational modifications; Protein function; Protein structure; Protein–protein interactions; SOD1; TDP-43

Mesh:

Substances:

Year:  2016        PMID: 27838743     DOI: 10.1007/s00018-016-2416-6

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  153 in total

Review 1.  Protein folding revisited. A polypeptide chain at the folding-misfolding-nonfolding cross-roads: which way to go?

Authors:  V N Uversky
Journal:  Cell Mol Life Sci       Date:  2003-09       Impact factor: 9.261

Review 2.  Flexible nets. The roles of intrinsic disorder in protein interaction networks.

Authors:  A Keith Dunker; Marc S Cortese; Pedro Romero; Lilia M Iakoucheva; Vladimir N Uversky
Journal:  FEBS J       Date:  2005-10       Impact factor: 5.542

3.  Isoform-specific antibodies reveal distinct subcellular localizations of C9orf72 in amyotrophic lateral sclerosis.

Authors:  Shangxi Xiao; Laura MacNair; Philip McGoldrick; Paul M McKeever; Jesse R McLean; Ming Zhang; Julia Keith; Lorne Zinman; Ekaterina Rogaeva; Janice Robertson
Journal:  Ann Neurol       Date:  2015-08-29       Impact factor: 10.422

4.  A majority of the cancer/testis antigens are intrinsically disordered proteins.

Authors:  Krithika Rajagopalan; Steven M Mooney; Nehal Parekh; Robert H Getzenberg; Prakash Kulkarni
Journal:  J Cell Biochem       Date:  2011-11       Impact factor: 4.429

5.  Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms.

Authors:  Pedro R Romero; Saima Zaidi; Ya Yin Fang; Vladimir N Uversky; Predrag Radivojac; Christopher J Oldfield; Marc S Cortese; Megan Sickmeier; Tanguy LeGall; Zoran Obradovic; A Keith Dunker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-22       Impact factor: 11.205

6.  Cytoplasmic mislocalization of TDP-43 is toxic to neurons and enhanced by a mutation associated with familial amyotrophic lateral sclerosis.

Authors:  Sami J Barmada; Gaia Skibinski; Erica Korb; Elizabeth J Rao; Jane Y Wu; Steven Finkbeiner
Journal:  J Neurosci       Date:  2010-01-13       Impact factor: 6.167

Review 7.  Intrinsically disordered proteins in human diseases: introducing the D2 concept.

Authors:  Vladimir N Uversky; Christopher J Oldfield; A Keith Dunker
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

Review 8.  A decade and a half of protein intrinsic disorder: biology still waits for physics.

Authors:  Vladimir N Uversky
Journal:  Protein Sci       Date:  2013-04-29       Impact factor: 6.725

9.  Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation.

Authors:  Chien-Hao Chiang; Cédric Grauffel; Lien-Szu Wu; Pan-Hsien Kuo; Lyudmila G Doudeva; Carmay Lim; Che-Kun James Shen; Hanna S Yuan
Journal:  Sci Rep       Date:  2016-02-17       Impact factor: 4.379

10.  ALS-Causing Mutations Significantly Perturb the Self-Assembly and Interaction with Nucleic Acid of the Intrinsically Disordered Prion-Like Domain of TDP-43.

Authors:  Liangzhong Lim; Yuanyuan Wei; Yimei Lu; Jianxing Song
Journal:  PLoS Biol       Date:  2016-01-06       Impact factor: 8.029

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  15 in total

Review 1.  The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.

Authors:  Rajeswari Appadurai; Vladimir N Uversky; Anand Srivastava
Journal:  J Membr Biol       Date:  2019-05-28       Impact factor: 1.843

2.  Granulins modulate liquid-liquid phase separation and aggregation of the prion-like C-terminal domain of the neurodegeneration-associated protein TDP-43.

Authors:  Anukool A Bhopatkar; Vladimir N Uversky; Vijayaraghavan Rangachari
Journal:  J Biol Chem       Date:  2020-01-06       Impact factor: 5.157

Review 3.  TDP43 ribonucleoprotein granules: physiologic function to pathologic aggregates.

Authors:  Giulia Ada Corbet; Joshua R Wheeler; Roy Parker; Kaitlin Weskamp
Journal:  RNA Biol       Date:  2021-08-19       Impact factor: 4.766

Review 4.  The roles of intrinsic disorder-based liquid-liquid phase transitions in the "Dr. Jekyll-Mr. Hyde" behavior of proteins involved in amyotrophic lateral sclerosis and frontotemporal lobar degeneration.

Authors:  Vladimir N Uversky
Journal:  Autophagy       Date:  2017-12-17       Impact factor: 16.016

Review 5.  Regulation of Neurodegeneration-associated Protein Fragments by the N-degron Pathways.

Authors:  Mohamed A Eldeeb; Mohamed A Ragheb; Marwa H Soliman; Richard P Fahlman
Journal:  Neurotox Res       Date:  2022-01-18       Impact factor: 3.911

6.  Functional Analysis of Human Hub Proteins and Their Interactors Involved in the Intrinsic Disorder-Enriched Interactions.

Authors:  Gang Hu; Zhonghua Wu; Vladimir N Uversky; Lukasz Kurgan
Journal:  Int J Mol Sci       Date:  2017-12-19       Impact factor: 5.923

Review 7.  Intrinsic Disorder in Proteins with Pathogenic Repeat Expansions.

Authors:  April L Darling; Vladimir N Uversky
Journal:  Molecules       Date:  2017-11-24       Impact factor: 4.411

8.  The molecular pathogenesis of superoxide dismutase 1-linked ALS is promoted by low oxygen tension.

Authors:  Isil Keskin; Elin Forsgren; Manuela Lehmann; Peter M Andersen; Thomas Brännström; Dale J Lange; Matthis Synofzik; Ulrika Nordström; Per Zetterström; Stefan L Marklund; Jonathan D Gilthorpe
Journal:  Acta Neuropathol       Date:  2019-03-12       Impact factor: 17.088

Review 9.  Molecular Mechanisms of TDP-43 Misfolding and Pathology in Amyotrophic Lateral Sclerosis.

Authors:  Archana Prasad; Vidhya Bharathi; Vishwanath Sivalingam; Amandeep Girdhar; Basant K Patel
Journal:  Front Mol Neurosci       Date:  2019-02-14       Impact factor: 5.639

10.  Potential Roles of Intrinsic Disorder in Maternal-Effect Proteins Involved in the Maintenance of DNA Methylation.

Authors:  Hongliang Liu; Qing Wei; Chenyang Huang; Yong Zhang; Zekun Guo
Journal:  Int J Mol Sci       Date:  2017-09-04       Impact factor: 5.923

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