| Literature DB >> 27833434 |
Sayeh Serri1, Johannes Frisch2, Thomas von Rintelen2.
Abstract
In this study, the genetic diversity of Iranian populations of two widespread Stenus species representing two ecomorphological forms, the "open living species" Stenus erythrocnemus Eppelsheim, 1884 and the "stratobiont" Stenus callidus Baudi di Selve, 1848, is presented using data from a fragment of the mitochondrial COI gene. We evaluate the mitochondrial cytochrome oxidase I haplotypes and the intraspecific genetic distance of these two species. Our results reveal a very low diversity of COI sequences in Stenus erythrocnemus in contrast to Stenus callidus. Moreover, the COI based phylogeny of a selection of Iranian Stenus support the monophyly of some species groups of Stenus proposed by Puthz (2008) and contradicts the traditional infrageneric classification.Entities:
Keywords: Iran; Staphylinidae; Stenus; ecomorphological forms; genetic variability; infrageneric classification
Year: 2016 PMID: 27833434 PMCID: PMC5096372 DOI: 10.3897/zookeys.626.8155
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Figures 1–4.1 Eppelsheim, 1884. 2 Baudi di Selve, 1848. 3 Haplotype network for DNA sequences of . The circle size shows the frequency of the haplotypes. Each dashed line represents a single mutation. 4 Haplotype network for DNA sequences of . The circle size shows the frequency of the haplotypes. Each dashed line represents a single mutation. Scale bars: 1mm.
cytochrome c oxidase subunit I
cytochrome c oxidase subunit I
Figure 7.Strict consensus of most-parsimonious trees. Values above the branches indicate clade bootstrap support (>50) using 1000 replicates. The geographical origin of the specimens is coded by numbers behind the species name which correspond to the geographical information in Table 1.
The specimens used in this study with their location data and the GenBank association number of submitted sequences of COI. The specimen number codes the geographical origin of the specimens in the phylogenetic tree (Figures 7, 8).
| Species | Specimen number | Collection site | GeneBank association number |
|---|---|---|---|
|
| 147 |
|
|
|
| 118 |
|
|
|
| 121, 122 |
|
|
|
| 117 |
|
|
|
| 114 |
|
|
|
| 111 |
|
|
|
| 110 |
|
|
|
| 120 |
|
|
|
| 125 |
|
|
|
| 115, 116 |
|
|
|
| 136 |
|
|
|
| 151 |
|
|
|
| 089 |
|
|
|
| 090 |
|
|
|
| 094 |
|
|
|
| 045, 046 |
|
|
|
| 092 |
|
|
|
| 103 |
|
|
|
| 031, 033 |
|
|
|
| 034 |
|
|
|
| 084 |
|
|
|
| 079–082, 085, 086 |
|
|
|
| 087 |
|
|
|
| 098, 099 |
|
|
|
| 035, 036 |
|
|
|
| 105–108 |
|
|
|
| 100 |
|
|
|
| 083 |
|
|
|
| 037 |
|
|
|
| 146 |
|
|
|
| 059, 060, 062 |
|
|
|
| 024 |
|
|
|
| 134 |
|
|
|
| 070 |
|
|
|
| 009 |
|
|
|
| 051–054 |
|
|
|
| 047–050 |
|
|
|
| 055–058 |
|
|
|
| 064 |
|
|
|
| 068, 069 |
|
|
|
| 071–074 |
|
|
|
| 011, 012 |
|
|
|
| 156 |
|
|
|
| 153 |
|
|
|
| 137 |
|
|
|
| 135 |
|
|
|
| 133 |
|
|
|
| 166 |
|
|
|
| 161 |
|
|
|
| 138 |
|
|
|
| 159 |
|
|
|
| 163 |
|
|
|
| 157 |
|
|
|
| 158 |
|
|
|
| 164 |
|
|
|
| 124 |
|
|
|
| 126–129 |
|
|
|
| 148 |
|
|
Figure 8.Maximum likelihood phylogram. Numbers on branches are bootstrap values (>50). The specimen codes correspond to the geographical information in Table 1. Scale shows number of substitutions per site.
Figure 9.Distribution map of sequenced specimens of (●) and (○). Numbers are haplotype numbers (see Table 4). Sites with more than one haplotype number indicate several geographically close localities.
Summary of genetic diversity indices in the mitochondrial COI gene segment of and .
| Species | N | L | k | H | h | π | Haplotype no.: sequence(s) no. |
|---|---|---|---|---|---|---|---|
|
| 29 | 658 | 30 | 14 | 0.911±0.034 | 0.01348±0.00074 | Hap_1: 031, 033, 037, 085, 086 |
|
| 28 | 658 | 3 | 4 | 0.267±0.107 | 0.00045±0.00019 | Hap_1: 009, 011, 012, 047, 048, 050, 051, 052, 053, 054, 055, 056, 057, 058, 059, 064, 068, 069, 070, 071, 072, 073, 074, 134 |
Abbreviations: N; L; k; H; h; π.
, number of sequences
, sequence length (number of bases)
, number of variable sites
, number of haplotypes
, haplotype diversity
, nucleotide diversity
Kimura two-parameter pairwise genetic distances between populations of .
| 031 | 033 | 034 | 035 | 036 | 037 | 045 | 046 | 079 | 080 | 081 | 082 | 083 | 084 | 085 | 086 | 087 | 089 | 090 | 092 | 094 | 098 | 099 | 100 | 103 | 105 | 106 | 107 | 108 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 031 | |||||||||||||||||||||||||||||
| 033 | 0.000 | ||||||||||||||||||||||||||||
| 034 | 0.006 | 0.006 | |||||||||||||||||||||||||||
| 035 | 0.022 | 0.022 | 0.022 | ||||||||||||||||||||||||||
| 036 | 0.022 | 0.022 | 0.022 | 0.000 | |||||||||||||||||||||||||
| 037 | 0.000 | 0.000 | 0.006 | 0.022 | 0.022 | ||||||||||||||||||||||||
| 045 | 0.002 | 0.002 | 0.008 | 0.023 | 0.023 | 0.002 | |||||||||||||||||||||||
| 046 | 0.002 | 0.002 | 0.008 | 0.023 | 0.023 | 0.002 | 0.000 | ||||||||||||||||||||||
| 079 | 0.012 | 0.012 | 0.011 | 0.028 | 0.028 | 0.012 | 0.014 | 0.014 | |||||||||||||||||||||
| 080 | 0.020 | 0.020 | 0.020 | 0.002 | 0.002 | 0.020 | 0.022 | 0.022 | 0.026 | ||||||||||||||||||||
| 081 | 0.006 | 0.006 | 0.000 | 0.022 | 0.022 | 0.006 | 0.008 | 0.008 | 0.011 | 0.020 | |||||||||||||||||||
| 082 | 0.012 | 0.012 | 0.011 | 0.028 | 0.028 | 0.012 | 0.014 | 0.014 | 0.000 | 0.026 | 0.011 | ||||||||||||||||||
| 083 | 0.020 | 0.020 | 0.020 | 0.002 | 0.002 | 0.020 | 0.022 | 0.022 | 0.026 | 0.000 | 0.020 | 0.026 | |||||||||||||||||
| 084 | 0.020 | 0.020 | 0.020 | 0.002 | 0.002 | 0.020 | 0.022 | 0.022 | 0.026 | 0.000 | 0.020 | 0.026 | 0.000 | ||||||||||||||||
| 085 | 0.000 | 0.000 | 0.006 | 0.022 | 0.022 | 0.000 | 0.002 | 0.002 | 0.012 | 0.020 | 0.006 | 0.012 | 0.020 | 0.020 | |||||||||||||||
| 086 | 0.000 | 0.000 | 0.006 | 0.022 | 0.022 | 0.000 | 0.002 | 0.002 | 0.012 | 0.020 | 0.006 | 0.012 | 0.020 | 0.020 | 0.000 | ||||||||||||||
| 087 | 0.003 | 0.003 | 0.009 | 0.022 | 0.022 | 0.003 | 0.005 | 0.005 | 0.015 | 0.020 | 0.009 | 0.015 | 0.020 | 0.020 | 0.003 | 0.003 | |||||||||||||
| 089 | 0.020 | 0.020 | 0.020 | 0.002 | 0.002 | 0.020 | 0.022 | 0.022 | 0.026 | 0.000 | 0.020 | 0.026 | 0.000 | 0.000 | 0.020 | 0.020 | 0.020 | ||||||||||||
| 090 | 0.020 | 0.020 | 0.020 | 0.002 | 0.002 | 0.020 | 0.022 | 0.022 | 0.026 | 0.000 | 0.020 | 0.026 | 0.000 | 0.000 | 0.020 | 0.020 | 0.020 | 0.000 | |||||||||||
| 092 | 0.023 | 0.023 | 0.023 | 0.005 | 0.005 | 0.023 | 0.025 | 0.025 | 0.030 | 0.003 | 0.023 | 0.030 | 0.003 | 0.003 | 0.023 | 0.023 | 0.023 | 0.003 | 0.003 | ||||||||||
| 094 | 0.008 | 0.008 | 0.002 | 0.023 | 0.023 | 0.008 | 0.009 | 0.009 | 0.012 | 0.022 | 0.002 | 0.012 | 0.022 | 0.022 | 0.008 | 0.008 | 0.011 | 0.022 | 0.022 | 0.022 | |||||||||
| 098 | 0.011 | 0.011 | 0.008 | 0.020 | 0.020 | 0.011 | 0.012 | 0.012 | 0.014 | 0.019 | 0.008 | 0.014 | 0.019 | 0.019 | 0.011 | 0.011 | 0.014 | 0.019 | 0.019 | 0.022 | 0.009 | ||||||||
| 099 | 0.003 | 0.003 | 0.009 | 0.022 | 0.022 | 0.003 | 0.002 | 0.002 | 0.015 | 0.020 | 0.009 | 0.015 | 0.020 | 0.020 | 0.003 | 0.003 | 0.003 | 0.020 | 0.020 | 0.023 | 0.011 | 0.014 | |||||||
| 100 | 0.020 | 0.020 | 0.020 | 0.002 | 0.002 | 0.020 | 0.022 | 0.022 | 0.026 | 0.000 | 0.020 | 0.026 | 0.000 | 0.000 | 0.020 | 0.020 | 0.020 | 0.000 | 0.000 | 0.003 | 0.022 | 0.019 | 0.020 | ||||||
| 103 | 0.020 | 0.020 | 0.020 | 0.002 | 0.002 | 0.020 | 0.022 | 0.022 | 0.026 | 0.000 | 0.020 | 0.026 | 0.000 | 0.000 | 0.020 | 0.020 | 0.020 | 0.000 | 0.000 | 0.003 | 0.022 | 0.019 | 0.020 | 0.000 | |||||
| 105 | 0.014 | 0.014 | 0.011 | 0.020 | 0.020 | 0.014 | 0.015 | 0.015 | 0.017 | 0.019 | 0.011 | 0.017 | 0.019 | 0.019 | 0.014 | 0.014 | 0.014 | 0.019 | 0.019 | 0.022 | 0.012 | 0.012 | 0.014 | 0.019 | 0.019 | ||||
| 106 | 0.011 | 0.011 | 0.008 | 0.020 | 0.020 | 0.011 | 0.012 | 0.012 | 0.014 | 0.019 | 0.008 | 0.014 | 0.019 | 0.019 | 0.011 | 0.011 | 0.014 | 0.019 | 0.019 | 0.022 | 0.009 | 0.000 | 0.014 | 0.019 | 0.019 | 0.012 | |||
| 107 | 0.011 | 0.011 | 0.008 | 0.017 | 0.017 | 0.011 | 0.012 | 0.012 | 0.014 | 0.015 | 0.008 | 0.014 | 0.015 | 0.015 | 0.011 | 0.011 | 0.011 | 0.015 | 0.015 | 0.019 | 0.009 | 0.009 | 0.011 | 0.015 | 0.015 | 0.003 | 0.009 | ||
| 108 | 0.012 | 0.012 | 0.009 | 0.022 | 0.022 | 0.012 | 0.014 | 0.014 | 0.015 | 0.020 | 0.009 | 0.015 | 0.020 | 0.020 | 0.012 | 0.012 | 0.015 | 0.020 | 0.020 | 0.023 | 0.011 | 0.002 | 0.015 | 0.020 | 0.020 | 0.014 | 0.002 | 0.011 |
Kimura two-parameter pairwise genetic distances between populations of .
| 009 | 011 | 012 | 024 | 047 | 048 | 049 | 050 | 051 | 052 | 053 | 054 | 055 | 056 | 057 | 058 | 059 | 060 | 062 | 064 | 068 | 069 | 070 | 071 | 072 | 073 | 074 | 134 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 009 | ||||||||||||||||||||||||||||
| 011 | 0.000 | |||||||||||||||||||||||||||
| 012 | 0.000 | 0.000 | ||||||||||||||||||||||||||
| 024 | 0.002 | 0.002 | 0.002 | |||||||||||||||||||||||||
| 047 | 0.000 | 0.000 | 0.000 | 0.002 | ||||||||||||||||||||||||
| 048 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | |||||||||||||||||||||||
| 049 | 0.002 | 0.002 | 0.002 | 0.003 | 0.002 | 0.002 | ||||||||||||||||||||||
| 050 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | |||||||||||||||||||||
| 051 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | ||||||||||||||||||||
| 052 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | |||||||||||||||||||
| 053 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | ||||||||||||||||||
| 054 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | |||||||||||||||||
| 055 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | ||||||||||||||||
| 056 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |||||||||||||||
| 057 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | ||||||||||||||
| 058 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |||||||||||||
| 059 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | ||||||||||||
| 060 | 0.002 | 0.002 | 0.002 | 0.003 | 0.002 | 0.002 | 0.003 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | |||||||||||
| 062 | 0.002 | 0.002 | 0.002 | 0.003 | 0.002 | 0.002 | 0.000 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.002 | 0.003 | ||||||||||
| 064 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | |||||||||
| 068 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | ||||||||
| 069 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | |||||||
| 070 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | ||||||
| 071 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | |||||
| 072 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | ||||
| 073 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |||
| 074 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | ||
| 134 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Figure 5.Distribution of in Iran (after Serri and Frisch 2016: 28).
Figure 6.Distribution of in Iran (after Serri and Frisch 2016: 28).