Literature DB >> 27832388

Optimization of industrial microorganisms: recent advances in synthetic dynamic regulators.

Byung Eun Min1, Hyun Gyu Hwang2, Hyun Gyu Lim1, Gyoo Yeol Jung3,4.   

Abstract

Production of biochemicals by industrial fermentation using microorganisms requires maintaining cellular production capacity, because maximal productivity is economically important. High-productivity microbial strains can be developed using static engineering, but these may not maintain maximal productivity throughout the culture period as culture conditions and cell states change dynamically. Additionally, economic reasons limit heterologous protein expression using inducible promoters to prevent metabolic burden for commodity chemical and biofuel production. Recently, synthetic and systems biology has been used to design genetic circuits, precisely controlling gene expression or influencing genetic behavior toward a desired phenotype. Development of dynamic regulators can maintain cellular phenotype in a maximum production state in response to factors including cell concentration, oxygen, temperature, pH, and metabolites. Herein, we introduce dynamic regulators of industrial microorganism optimization and discuss metabolic flux fine control by dynamic regulators in response to metabolites or extracellular stimuli, robust production systems, and auto-induction systems using quorum sensing.

Entities:  

Keywords:  Dynamic regulator; Industrial microorganism; Quorum sensing; Synthetic biology; Transcription factors

Mesh:

Substances:

Year:  2016        PMID: 27832388     DOI: 10.1007/s10295-016-1867-y

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  102 in total

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Authors:  Michiko E Taga; Stephen T Miller; Bonnie L Bassler
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2.  Engineering static and dynamic control of synthetic pathways.

Authors:  William J Holtz; Jay D Keasling
Journal:  Cell       Date:  2010-01-08       Impact factor: 41.582

3.  Self-induced metabolic state switching by a tunable cell density sensor for microbial isopropanol production.

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Review 4.  Metabolic engineering for the production of natural products.

Authors:  Lauren B Pickens; Yi Tang; Yit-Heng Chooi
Journal:  Annu Rev Chem Biomol Eng       Date:  2011       Impact factor: 11.059

5.  Automated physics-based design of synthetic riboswitches from diverse RNA aptamers.

Authors:  Amin Espah Borujeni; Dennis M Mishler; Jingzhi Wang; Walker Huso; Howard M Salis
Journal:  Nucleic Acids Res       Date:  2015-11-30       Impact factor: 16.971

6.  Genetic switchboard for synthetic biology applications.

Authors:  Jarred M Callura; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

7.  Development and testing of a green fluorescent protein-based bacterial biosensor for measuring bioavailable arsenic in contaminated groundwater samples.

Authors:  Vivian Hsiu-Chuan Liao; Kun-Lin Ou
Journal:  Environ Toxicol Chem       Date:  2005-07       Impact factor: 3.742

8.  Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule.

Authors:  R P Novick; H F Ross; S J Projan; J Kornblum; B Kreiswirth; S Moghazeh
Journal:  EMBO J       Date:  1993-10       Impact factor: 11.598

9.  Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology.

Authors:  Baojun Wang; Richard I Kitney; Nicolas Joly; Martin Buck
Journal:  Nat Commun       Date:  2011-10-18       Impact factor: 14.919

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

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Journal:  PLoS One       Date:  2022-06-23       Impact factor: 3.752

2.  Enterobacter oligotrophica sp. nov., a novel oligotroph isolated from leaf soil.

Authors:  Hironaga Akita; Akinori Matsushika; Zen-Ichiro Kimura
Journal:  Microbiologyopen       Date:  2019-05-07       Impact factor: 3.139

Review 3.  Pediococcus pentosaceus, a future additive or probiotic candidate.

Authors:  Shiman Jiang; Lingzhi Cai; Longxian Lv; Lanjuan Li
Journal:  Microb Cell Fact       Date:  2021-02-16       Impact factor: 5.328

4.  Dynamic control of endogenous metabolism with combinatorial logic circuits.

Authors:  Felix Moser; Amin Espah Borujeni; Amar N Ghodasara; Ewen Cameron; Yongjin Park; Christopher A Voigt
Journal:  Mol Syst Biol       Date:  2018-11-27       Impact factor: 11.429

  4 in total

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