Literature DB >> 27830252

Findings from the Section on Bioinformatics and Translational Informatics.

H Dauchel, T Lecroq.   

Abstract

OBJECTIVES: To summarize excellent current research and propose a selection of best papers published in 2015 in the field of Bioinformatics and Translational Informatics with application in the health domain and clinical care.
METHOD: We provide a synopsis of the articles selected for the IMIA Yearbook 2016, from which we attempt to derive a synthetic overview of current and future activities in the field. As last year, a first step of selection was performed by querying MEDLINE with a list of MeSH descriptors completed by a list of terms adapted to the section. Each section editor has evaluated separately the set of 1,566 articles and the evaluation results were merged for retaining 14 articles for peer-review.
RESULTS: The selection and evaluation process of this Yearbook's section on Bioinformatics and Translational Informatics yielded four excellent articles focusing this year on data management of large-scale datasets and genomic medicine that are mainly new method-based papers. Three articles explore the high potential of the re-analysis of previously collected data, here from The Cancer Genome Atlas project (TCGA) and one article presents an original analysis of genomic data from sub-Saharan Africa populations.
CONCLUSIONS: The current research activities in Bioinformatics and Translational Informatics with application in the health domain continues to explore new algorithms and statistical models to manage and interpret large-scale genomic datasets. From population wide genome sequencing for cataloging genomic variants to the comprehension of functional impact on pathways and molecular interactions regarding a given pathology, making sense of large genomic data requires a necessary effort to address the issue of clinical translation for precise diagnostic and personalized medicine.

Keywords:  Translational medical research; computational biology; gene genome expression; genome; medical informatics

Mesh:

Year:  2016        PMID: 27830252      PMCID: PMC6278879          DOI: 10.15265/IY-2016-050

Source DB:  PubMed          Journal:  Yearb Med Inform        ISSN: 0943-4747


  20 in total

1.  Developing and evaluating criteria to help reviewers of biomedical informatics manuscripts.

Authors:  Elske Ammenwerth; Astrid C Wolff; Petra Knaup; Hanno Ulmer; Stefan Skonetzki; Jan H van Bemmel; Alexa T McCray; Reinhold Haux; Casimir Kulikowski
Journal:  J Am Med Inform Assoc       Date:  2003-06-04       Impact factor: 4.497

2.  Toward a formalization of the process to select IMIA Yearbook best papers.

Authors:  J-B Lamy; B Séroussi; N Griffon; G Kerdelhué; M-C Jaulent; J Bouaud
Journal:  Methods Inf Med       Date:  2014-11-14       Impact factor: 2.176

3.  GENOMICS. A federated ecosystem for sharing genomic, clinical data.

Authors: 
Journal:  Science       Date:  2016-06-10       Impact factor: 47.728

4.  A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers.

Authors:  Yasin Şenbabaoğlu; Selçuk Onur Sümer; Francisco Sánchez-Vega; Debra Bemis; Giovanni Ciriello; Nikolaus Schultz; Chris Sander
Journal:  PLoS Comput Biol       Date:  2016-02-29       Impact factor: 4.475

5.  A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline.

Authors:  Paul A Rudnick; Sanford P Markey; Jeri Roth; Yuri Mirokhin; Xinjian Yan; Dmitrii V Tchekhovskoi; Nathan J Edwards; Ratna R Thangudu; Karen A Ketchum; Christopher R Kinsinger; Mehdi Mesri; Henry Rodriguez; Stephen E Stein
Journal:  J Proteome Res       Date:  2016-02-25       Impact factor: 4.466

6.  A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals.

Authors:  Jieming Chen; Joel Rozowsky; Timur R Galeev; Arif Harmanci; Robert Kitchen; Jason Bedford; Alexej Abyzov; Yong Kong; Lynne Regan; Mark Gerstein
Journal:  Nat Commun       Date:  2016-04-18       Impact factor: 14.919

7.  Identification of neutral tumor evolution across cancer types.

Authors:  Marc J Williams; Benjamin Werner; Chris P Barnes; Trevor A Graham; Andrea Sottoriva
Journal:  Nat Genet       Date:  2016-01-18       Impact factor: 38.330

8.  Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells.

Authors:  Jian-Rong Li; Chuan-Hu Sun; Wenyuan Li; Rou-Fang Chao; Chieh-Chen Huang; Xianghong Jasmine Zhou; Chun-Chi Liu
Journal:  Nucleic Acids Res       Date:  2015-11-23       Impact factor: 19.160

9.  INTEGRATE: gene fusion discovery using whole genome and transcriptome data.

Authors:  Jin Zhang; Nicole M White; Heather K Schmidt; Robert S Fulton; Chad Tomlinson; Wesley C Warren; Richard K Wilson; Christopher A Maher
Journal:  Genome Res       Date:  2015-11-10       Impact factor: 9.043

10.  Proteogenomics connects somatic mutations to signalling in breast cancer.

Authors:  Philipp Mertins; D R Mani; Kelly V Ruggles; Michael A Gillette; Karl R Clauser; Pei Wang; Xianlong Wang; Jana W Qiao; Song Cao; Francesca Petralia; Emily Kawaler; Filip Mundt; Karsten Krug; Zhidong Tu; Jonathan T Lei; Michael L Gatza; Matthew Wilkerson; Charles M Perou; Venkata Yellapantula; Kuan-lin Huang; Chenwei Lin; Michael D McLellan; Ping Yan; Sherri R Davies; R Reid Townsend; Steven J Skates; Jing Wang; Bing Zhang; Christopher R Kinsinger; Mehdi Mesri; Henry Rodriguez; Li Ding; Amanda G Paulovich; David Fenyö; Matthew J Ellis; Steven A Carr
Journal:  Nature       Date:  2016-05-25       Impact factor: 49.962

View more
  1 in total

1.  Findings from the Section on Bioinformatics and Translational Informatics.

Authors:  H Dauchel; T Lecroq
Journal:  Yearb Med Inform       Date:  2016-11-10
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.