OBJECTIVES: To summarize excellent current research and propose a selection of best papers published in 2015 in the field of Bioinformatics and Translational Informatics with application in the health domain and clinical care. METHOD: We provide a synopsis of the articles selected for the IMIA Yearbook 2016, from which we attempt to derive a synthetic overview of current and future activities in the field. As last year, a first step of selection was performed by querying MEDLINE with a list of MeSH descriptors completed by a list of terms adapted to the section. Each section editor has evaluated separately the set of 1,566 articles and the evaluation results were merged for retaining 14 articles for peer-review. RESULTS: The selection and evaluation process of this Yearbook's section on Bioinformatics and Translational Informatics yielded four excellent articles focusing this year on data management of large-scale datasets and genomic medicine that are mainly new method-based papers. Three articles explore the high potential of the re-analysis of previously collected data, here from The Cancer Genome Atlas project (TCGA) and one article presents an original analysis of genomic data from sub-Saharan Africa populations. CONCLUSIONS: The current research activities in Bioinformatics and Translational Informatics with application in the health domain continues to explore new algorithms and statistical models to manage and interpret large-scale genomic datasets. From population wide genome sequencing for cataloging genomic variants to the comprehension of functional impact on pathways and molecular interactions regarding a given pathology, making sense of large genomic data requires a necessary effort to address the issue of clinical translation for precise diagnostic and personalized medicine.
OBJECTIVES: To summarize excellent current research and propose a selection of best papers published in 2015 in the field of Bioinformatics and Translational Informatics with application in the health domain and clinical care. METHOD: We provide a synopsis of the articles selected for the IMIA Yearbook 2016, from which we attempt to derive a synthetic overview of current and future activities in the field. As last year, a first step of selection was performed by querying MEDLINE with a list of MeSH descriptors completed by a list of terms adapted to the section. Each section editor has evaluated separately the set of 1,566 articles and the evaluation results were merged for retaining 14 articles for peer-review. RESULTS: The selection and evaluation process of this Yearbook's section on Bioinformatics and Translational Informatics yielded four excellent articles focusing this year on data management of large-scale datasets and genomic medicine that are mainly new method-based papers. Three articles explore the high potential of the re-analysis of previously collected data, here from The Cancer Genome Atlas project (TCGA) and one article presents an original analysis of genomic data from sub-Saharan Africa populations. CONCLUSIONS: The current research activities in Bioinformatics and Translational Informatics with application in the health domain continues to explore new algorithms and statistical models to manage and interpret large-scale genomic datasets. From population wide genome sequencing for cataloging genomic variants to the comprehension of functional impact on pathways and molecular interactions regarding a given pathology, making sense of large genomic data requires a necessary effort to address the issue of clinical translation for precise diagnostic and personalized medicine.
Keywords:
Translational medical research; computational biology; gene genome expression; genome; medical informatics
Authors: Elske Ammenwerth; Astrid C Wolff; Petra Knaup; Hanno Ulmer; Stefan Skonetzki; Jan H van Bemmel; Alexa T McCray; Reinhold Haux; Casimir Kulikowski Journal: J Am Med Inform Assoc Date: 2003-06-04 Impact factor: 4.497
Authors: Paul A Rudnick; Sanford P Markey; Jeri Roth; Yuri Mirokhin; Xinjian Yan; Dmitrii V Tchekhovskoi; Nathan J Edwards; Ratna R Thangudu; Karen A Ketchum; Christopher R Kinsinger; Mehdi Mesri; Henry Rodriguez; Stephen E Stein Journal: J Proteome Res Date: 2016-02-25 Impact factor: 4.466
Authors: Jieming Chen; Joel Rozowsky; Timur R Galeev; Arif Harmanci; Robert Kitchen; Jason Bedford; Alexej Abyzov; Yong Kong; Lynne Regan; Mark Gerstein Journal: Nat Commun Date: 2016-04-18 Impact factor: 14.919
Authors: Jin Zhang; Nicole M White; Heather K Schmidt; Robert S Fulton; Chad Tomlinson; Wesley C Warren; Richard K Wilson; Christopher A Maher Journal: Genome Res Date: 2015-11-10 Impact factor: 9.043
Authors: Philipp Mertins; D R Mani; Kelly V Ruggles; Michael A Gillette; Karl R Clauser; Pei Wang; Xianlong Wang; Jana W Qiao; Song Cao; Francesca Petralia; Emily Kawaler; Filip Mundt; Karsten Krug; Zhidong Tu; Jonathan T Lei; Michael L Gatza; Matthew Wilkerson; Charles M Perou; Venkata Yellapantula; Kuan-lin Huang; Chenwei Lin; Michael D McLellan; Ping Yan; Sherri R Davies; R Reid Townsend; Steven J Skates; Jing Wang; Bing Zhang; Christopher R Kinsinger; Mehdi Mesri; Henry Rodriguez; Li Ding; Amanda G Paulovich; David Fenyö; Matthew J Ellis; Steven A Carr Journal: Nature Date: 2016-05-25 Impact factor: 49.962