Literature DB >> 27825771

Riches in RAGs: Revealing the V(D)J Recombinase through High-Resolution Structures.

Karla K Rodgers1.   

Abstract

Development of the adaptive immune system is dependent on V(D)J recombination, which forms functional antigen receptor genes through rearrangement of component gene segments. The V(D)J recombinase, comprising recombination-activating proteins RAG1 and RAG2, guides the initial DNA cleavage events to the recombination signal sequence (RSS), which flanks each gene segment. Although the enzymatic steps for RAG-mediated endonucleolytic activity were established over two decades ago, only recently have high-resolution structural studies of the catalytically active core regions of the RAG proteins shed light on conformational requirements for the reaction. While outstanding questions remain, we have a clearer picture of how RAG proteins function in generating the diverse repertoires of antigen receptors, the underlying foundation of the adaptive immune system.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RAG1; RAG2; V(D)J recombination; lymphocyte development

Mesh:

Substances:

Year:  2016        PMID: 27825771      PMCID: PMC5182142          DOI: 10.1016/j.tibs.2016.10.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  77 in total

Review 1.  The bounty of RAGs: recombination signal complexes and reaction outcomes.

Authors:  Patrick C Swanson
Journal:  Immunol Rev       Date:  2004-08       Impact factor: 12.988

2.  DNA cleavage activity of the V(D)J recombination protein RAG1 is autoregulated.

Authors:  Pallabi De; Mandy M Peak; Karla K Rodgers
Journal:  Mol Cell Biol       Date:  2004-08       Impact factor: 4.272

3.  Requirements for DNA hairpin formation by RAG1/2.

Authors:  Gabrielle J Grundy; Joanne E Hesse; Martin Gellert
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-16       Impact factor: 11.205

Review 4.  V(D)J recombination: mechanisms of initiation.

Authors:  David G Schatz; Patrick C Swanson
Journal:  Annu Rev Genet       Date:  2011-08-19       Impact factor: 16.830

5.  An interdomain boundary in RAG1 facilitates cooperative binding to RAG2 in formation of the V(D)J recombinase complex.

Authors:  Jennifer N Byrum; Shuying Zhao; Negar S Rahman; Lori M Gwyn; William Rodgers; Karla K Rodgers
Journal:  Protein Sci       Date:  2015-04-02       Impact factor: 6.725

6.  Synapsis alters RAG-mediated nicking at Tcrb recombination signal sequences: implications for the “beyond 12/23” rule.

Authors:  Joydeep K Banerjee; David G Schatz
Journal:  Mol Cell Biol       Date:  2014-07       Impact factor: 4.272

Review 7.  RAG-dependent primary immunodeficiencies.

Authors:  Cristina Sobacchi; Veronica Marrella; Francesca Rucci; Paolo Vezzoni; Anna Villa
Journal:  Hum Mutat       Date:  2006-12       Impact factor: 4.878

8.  The architecture of the 12RSS in V(D)J recombination signal and synaptic complexes.

Authors:  Mihai Ciubotaru; Marius D Surleac; Lauren Ann Metskas; Peter Koo; Elizabeth Rhoades; Andrei J Petrescu; David G Schatz
Journal:  Nucleic Acids Res       Date:  2014-12-29       Impact factor: 16.971

Review 9.  Ubiquitination events that regulate recombination of immunoglobulin Loci gene segments.

Authors:  Jaime Chao; Gerson Rothschild; Uttiya Basu
Journal:  Front Immunol       Date:  2014-03-11       Impact factor: 7.561

10.  Discovery of an Active RAG Transposon Illuminates the Origins of V(D)J Recombination.

Authors:  Shengfeng Huang; Xin Tao; Shaochun Yuan; Yuhang Zhang; Peiyi Li; Helen A Beilinson; Ya Zhang; Wenjuan Yu; Pierre Pontarotti; Hector Escriva; Yann Le Petillon; Xiaolong Liu; Shangwu Chen; David G Schatz; Anlong Xu
Journal:  Cell       Date:  2016-06-09       Impact factor: 41.582

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  9 in total

1.  Biochemical activity of RAGs is impeded by Dolutegravir, an HIV integrase inhibitor.

Authors:  Namrata M Nilavar; Amita M Paranjape; Sathees C Raghavan
Journal:  Cell Death Discov       Date:  2020-06-12

Review 2.  V(D)J recombination, somatic hypermutation and class switch recombination of immunoglobulins: mechanism and regulation.

Authors:  Xiying Chi; Yue Li; Xiaoyan Qiu
Journal:  Immunology       Date:  2020-02-27       Impact factor: 7.397

3.  Full length RAG2 expression enhances the DNA damage response in pre-B cells.

Authors:  Jennifer N Byrum; Walker E Hoolehan; Destiny A Simpson; William Rodgers; Karla K Rodgers
Journal:  Immunobiology       Date:  2021-04-06       Impact factor: 3.144

4.  Biochemical activity of RAGs is impeded by Dolutegravir, an HIV integrase inhibitor.

Authors:  Namrata M Nilavar; Amita M Paranjape; Sathees C Raghavan
Journal:  Cell Death Discov       Date:  2020-06-12

5.  RAG2 localization and dynamics in the pre-B cell nucleus.

Authors:  William Rodgers; Jennifer N Byrum; Destiny A Simpson; Walker Hoolehan; Karla K Rodgers
Journal:  PLoS One       Date:  2019-05-10       Impact factor: 3.240

6.  The evolution of zebrafish RAG2 protein is required for adapting to the elevated body temperature of the higher endothermic vertebrates.

Authors:  Ao Sun; Ke Xu; Haifeng Liu; Hua Li; Yaohuang Shi; Xiaoyan Zhu; Tao Liang; Xinyue Li; Xianxia Cao; Yanhong Ji; Taijiao Jiang; Chenqi Xu; Xiaolong Liu
Journal:  Sci Rep       Date:  2020-03-05       Impact factor: 4.379

7.  Structure of a P element transposase-DNA complex reveals unusual DNA structures and GTP-DNA contacts.

Authors:  George E Ghanim; Elizabeth H Kellogg; Eva Nogales; Donald C Rio
Journal:  Nat Struct Mol Biol       Date:  2019-10-28       Impact factor: 15.369

8.  Individual B cells transcribe multiple rearranged immunoglobulin light chains in teleost fish.

Authors:  Pedro Perdiguero; Esther Morel; Patricia Díaz-Rosales; Carolina Tafalla
Journal:  iScience       Date:  2021-05-24

9.  More than one antibody of individual B cells revealed by single-cell immune profiling.

Authors:  Zhan Shi; Qingyang Zhang; Huige Yan; Ying Yang; Pingzhang Wang; Yixiao Zhang; Zhenling Deng; Meng Yu; Wenjing Zhou; Qianqian Wang; Xi Yang; Xiaoning Mo; Chi Zhang; Jing Huang; Hui Dai; Baofa Sun; Yongliang Zhao; Liang Zhang; Yun-Gui Yang; Xiaoyan Qiu
Journal:  Cell Discov       Date:  2019-12-10       Impact factor: 10.849

  9 in total

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