Literature DB >> 27821283

Dynamic conformational changes in the rhesus TRIM5α dimer dictate the potency of HIV-1 restriction.

Rajan Lamichhane1, Santanu Mukherjee2, Nikolai Smolin3, Raymond F Pauszek1, Margret Bradley2, Jaya Sastri4, Seth L Robia3, David Millar1, Edward M Campbell2.   

Abstract

The TRIM5α protein from rhesus macaques (rhTRIM5α) mediates a potent inhibition of HIV-1 infection via a mechanism that involves the abortive disassembly of the viral core. We have demonstrated that alpha-helical elements within the Linker 2 (L2) region, which lies between the SPRY domain and the Coiled-Coil domain, influence the potency of restriction. Here, we utilize single-molecule FRET analysis to reveal that the L2 region of the TRIM5α dimer undergoes dynamic conformational changes, which results in the displacement of L2 regions by 25 angstroms relative to each other. Analysis of restriction enhancing or abrogating mutations in the L2 region reveal that restriction defective mutants are unable to undergo dynamic conformational changes and do not assume compact, alpha-helical conformations in the L2 region. These data suggest a model in which conformational changes in the L2 region mediate displacement of CA bound SPRY domains to induce the destabilization of assembled capsid during restriction. Copyright Â
© 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Coiled coil; Dimer; HIV-1; Molecular dynamics simulation; Restriction factor; Single molecule FRET; TRIM5alpha; Tripartite Motif; smFRET

Mesh:

Substances:

Year:  2016        PMID: 27821283      PMCID: PMC5327651          DOI: 10.1016/j.virol.2016.10.003

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  37 in total

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Authors:  Alexander D MacKerell; Michael Feig; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2004-01-28       Impact factor: 15.419

2.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

3.  Single-molecule Förster resonance energy transfer reveals an innate fidelity checkpoint in DNA polymerase I.

Authors:  Svitlana Y Berezhna; Joshua P Gill; Rajan Lamichhane; David P Millar
Journal:  J Am Chem Soc       Date:  2012-06-29       Impact factor: 15.419

4.  Identification of residues within the L2 region of rhesus TRIM5alpha that are required for retroviral restriction and cytoplasmic body localization.

Authors:  Jaya Sastri; Christopher O'Connor; Cindy M Danielson; Michael McRaven; Patricio Perez; Felipe Diaz-Griffero; Edward M Campbell
Journal:  Virology       Date:  2010-07-14       Impact factor: 3.616

5.  Single-molecule view of basal activity and activation mechanisms of the G protein-coupled receptor β2AR.

Authors:  Rajan Lamichhane; Jeffrey J Liu; Goran Pljevaljcic; Kate L White; Edwin van der Schans; Vsevolod Katritch; Raymond C Stevens; Kurt Wüthrich; David P Millar
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

6.  Biochemical characterization of a recombinant TRIM5alpha protein that restricts human immunodeficiency virus type 1 replication.

Authors:  Charles R Langelier; Virginie Sandrin; Debra M Eckert; Devin E Christensen; Viswanathan Chandrasekaran; Steven L Alam; Christopher Aiken; John C Olsen; Alak Kanti Kar; Joseph G Sodroski; Wesley I Sundquist
Journal:  J Virol       Date:  2008-09-17       Impact factor: 5.103

7.  A B-box 2 surface patch important for TRIM5alpha self-association, capsid binding avidity, and retrovirus restriction.

Authors:  Felipe Diaz-Griffero; Xu-rong Qin; Fumiaki Hayashi; Takanori Kigawa; Andres Finzi; Zoe Sarnak; Maritza Lienlaf; Shigeyuki Yokoyama; Joseph Sodroski
Journal:  J Virol       Date:  2009-08-05       Impact factor: 5.103

8.  The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.

Authors:  Matthew Stremlau; Christopher M Owens; Michel J Perron; Michael Kiessling; Patrick Autissier; Joseph Sodroski
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

9.  All three variable regions of the TRIM5alpha B30.2 domain can contribute to the specificity of retrovirus restriction.

Authors:  Sadayuki Ohkura; Melvyn W Yap; Tom Sheldon; Jonathan P Stoye
Journal:  J Virol       Date:  2006-09       Impact factor: 5.103

10.  TRIM5 alpha cytoplasmic bodies are highly dynamic structures.

Authors:  Edward M Campbell; Mark P Dodding; Melvyn W Yap; Xiaolu Wu; Sarah Gallois-Montbrun; Michael H Malim; Jonathan P Stoye; Thomas J Hope
Journal:  Mol Biol Cell       Date:  2007-03-28       Impact factor: 4.138

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  6 in total

1.  To TRIM or not to TRIM: the balance of host-virus interactions mediated by the ubiquitin system.

Authors:  Adam Hage; Ricardo Rajsbaum
Journal:  J Gen Virol       Date:  2019-12       Impact factor: 3.891

Review 2.  Restriction of HIV-1 and other retroviruses by TRIM5.

Authors:  Barbie K Ganser-Pornillos; Owen Pornillos
Journal:  Nat Rev Microbiol       Date:  2019-07-16       Impact factor: 60.633

Review 3.  Updating on Roles of HIV Intrinsic Factors: A Review of Their Antiviral Mechanisms and Emerging Functions.

Authors:  Sudarat Hadpech; Sutpirat Moonmuang; Koollawat Chupradit; Umpa Yasamut; Chatchai Tayapiwatana
Journal:  Intervirology       Date:  2021-08-31       Impact factor: 2.294

Review 4.  The TRIMendous Role of TRIMs in Virus-Host Interactions.

Authors:  Sarah van Tol; Adam Hage; Maria Isabel Giraldo; Preeti Bharaj; Ricardo Rajsbaum
Journal:  Vaccines (Basel)       Date:  2017-08-22

5.  TRIM5α SPRY/coiled-coil interactions optimize avid retroviral capsid recognition.

Authors:  Marcin D Roganowicz; Sevnur Komurlu; Santanu Mukherjee; Jacek Plewka; Steven L Alam; Katarzyna A Skorupka; Yueping Wan; Damian Dawidowski; David S Cafiso; Barbie K Ganser-Pornillos; Edward M Campbell; Owen Pornillos
Journal:  PLoS Pathog       Date:  2017-10-17       Impact factor: 6.823

6.  Defects in assembly explain reduced antiviral activity of the G249D polymorphism in human TRIM5α.

Authors:  Sevnur Kömürlü; Margret Bradley; Nikolai Smolin; Sabrina Imam; Raymond F Pauszek; Seth L Robia; David Millar; Emi E Nakayama; Tatsuo Shioda; Edward M Campbell
Journal:  PLoS One       Date:  2019-03-19       Impact factor: 3.240

  6 in total

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