Literature DB >> 27818791

mclust 5: Clustering, Classification and Density Estimation Using Gaussian Finite Mixture Models.

Luca Scrucca1, Michael Fop2, T Brendan Murphy2, Adrian E Raftery3.   

Abstract

Finite mixture models are being used increasingly to model a wide variety of random phenomena for clustering, classification and density estimation. mclust is a powerful and popular package which allows modelling of data as a Gaussian finite mixture with different covariance structures and different numbers of mixture components, for a variety of purposes of analysis. Recently, version 5 of the package has been made available on CRAN. This updated version adds new covariance structures, dimension reduction capabilities for visualisation, model selection criteria, initialisation strategies for the EM algorithm, and bootstrap-based inference, making it a full-featured R package for data analysis via finite mixture modelling.

Entities:  

Year:  2016        PMID: 27818791      PMCID: PMC5096736     

Source DB:  PubMed          Journal:  R J        ISSN: 2073-4859            Impact factor:   3.984


  7 in total

1.  Model-based clustering and data transformations for gene expression data.

Authors:  K Y Yeung; C Fraley; A Murua; A E Raftery; W L Ruzzo
Journal:  Bioinformatics       Date:  2001-10       Impact factor: 6.937

2.  Donuts, scratches and blanks: robust model-based segmentation of microarray images.

Authors:  Qunhua Li; Chris Fraley; Roger E Bumgarner; Ka Yee Yeung; Adrian E Raftery
Journal:  Bioinformatics       Date:  2005-04-21       Impact factor: 6.937

3.  A model-based cluster analysis of social experiences in clinically anxious youth: links to emotional functioning.

Authors:  Cynthia Suveg; Marni L Jacob; Monica Whitehead; Anna Jones; Julie Newman Kingery
Journal:  Anxiety Stress Coping       Date:  2014-03-03

4.  Estimation and evidence in forensic anthropology: sex and race.

Authors:  Lyle W Konigsberg; Bridget F B Algee-Hewitt; Dawnie Wolfe Steadman
Journal:  Am J Phys Anthropol       Date:  2009-05       Impact factor: 2.868

5.  Improved initialisation of model-based clustering using Gaussian hierarchical partitions.

Authors:  Luca Scrucca; Adrian E Raftery
Journal:  Adv Data Anal Classif       Date:  2015-10-26

6.  ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering.

Authors:  Bie Verbist; Lieven Clement; Joke Reumers; Kim Thys; Alexander Vapirev; Willem Talloen; Yves Wetzels; Joris Meys; Jeroen Aerssens; Luc Bijnens; Olivier Thas
Journal:  BMC Bioinformatics       Date:  2015-02-22       Impact factor: 3.169

7.  Diet-related chronic disease in the northeastern United States: a model-based clustering approach.

Authors:  Abby Flynt; Madeleine I G Daepp
Journal:  Int J Health Geogr       Date:  2015-09-04       Impact factor: 3.918

  7 in total
  372 in total

1.  Cross-species chromatin interactions drive transcriptional rewiring in Epstein-Barr virus-positive gastric adenocarcinoma.

Authors:  Atsushi Okabe; Kie Kyon Huang; Keisuke Matsusaka; Masaki Fukuyo; Manjie Xing; Xuewen Ong; Takayuki Hoshii; Genki Usui; Motoaki Seki; Yasunobu Mano; Bahityar Rahmutulla; Teru Kanda; Takayoshi Suzuki; Sun Young Rha; Tetsuo Ushiku; Masashi Fukayama; Patrick Tan; Atsushi Kaneda
Journal:  Nat Genet       Date:  2020-07-27       Impact factor: 38.330

2.  Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits.

Authors:  Marianyela Petrizzelli; Dominique de Vienne; Christine Dillmann
Journal:  Genetics       Date:  2018-12-03       Impact factor: 4.562

3.  EN1 Is a Transcriptional Dependency in Triple-Negative Breast Cancer Associated with Brain Metastasis.

Authors:  Guillermo Peluffo; Ashim Subedee; Nicholas W Harper; Natalie Kingston; Bojana Jovanović; Felipe Flores; Laura E Stevens; Francisco Beca; Anne Trinh; Chandra Sekhar Reddy Chilamakuri; Evangelia K Papachristou; Katherine Murphy; Ying Su; Andriy Marusyk; Clive S D'Santos; Oscar M Rueda; Andrew H Beck; Carlos Caldas; Jason S Carroll; Kornelia Polyak
Journal:  Cancer Res       Date:  2019-06-25       Impact factor: 12.701

4.  Whole-Genome Single-Nucleotide Polymorphism (SNP) Analysis Applied Directly to Stool for Genotyping Shiga Toxin-Producing Escherichia coli: an Advanced Molecular Detection Method for Foodborne Disease Surveillance and Outbreak Tracking.

Authors:  Navjot Singh; Pascal Lapierre; Tammy M Quinlan; Tanya A Halse; Samantha Wirth; Michelle C Dickinson; Erica Lasek-Nesselquist; Kimberlee A Musser
Journal:  J Clin Microbiol       Date:  2019-06-25       Impact factor: 5.948

5.  Rest-activity rhythm profiles associated with manic-hypomanic and depressive symptoms.

Authors:  Stephen F Smagula; Robert T Krafty; Julian F Thayer; Daniel J Buysse; Martica H Hall
Journal:  J Psychiatr Res       Date:  2018-04-21       Impact factor: 4.791

6.  Association Between Circulating Lipids and Future Weight Gain in Individuals With an At-Risk Mental State and in First-Episode Psychosis.

Authors:  Santosh Lamichhane; Alex M Dickens; Partho Sen; Heikki Laurikainen; Faith Borgan; Jaana Suvisaari; Tuulia Hyötyläinen; Oliver Howes; Jarmo Hietala; Matej Orešič
Journal:  Schizophr Bull       Date:  2021-01-23       Impact factor: 9.306

7.  Pathological structure of visuospatial neglect: A comprehensive multivariate analysis of spatial and non-spatial aspects.

Authors:  Yusaku Takamura; Shintaro Fujii; Satoko Ohmatsu; Shu Morioka; Noritaka Kawashima
Journal:  iScience       Date:  2021-03-16

8.  Geometric morphometrics of microscopic animals as exemplified by model nematodes.

Authors:  Tobias Theska; Bogdan Sieriebriennikov; Sara S Wighard; Michael S Werner; Ralf J Sommer
Journal:  Nat Protoc       Date:  2020-07-06       Impact factor: 13.491

9.  A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.

Authors:  Darren A Cusanovich; Andrew J Hill; Delasa Aghamirzaie; Riza M Daza; Hannah A Pliner; Joel B Berletch; Galina N Filippova; Xingfan Huang; Lena Christiansen; William S DeWitt; Choli Lee; Samuel G Regalado; David F Read; Frank J Steemers; Christine M Disteche; Cole Trapnell; Jay Shendure
Journal:  Cell       Date:  2018-08-02       Impact factor: 41.582

10.  clustvarsel: A Package Implementing Variable Selection for Gaussian Model-Based Clustering in R.

Authors:  Luca Scrucca; Adrian E Raftery
Journal:  J Stat Softw       Date:  2018-04-17       Impact factor: 6.440

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