Literature DB >> 27818219

Removal of oxidatively generated DNA damage by overlapping repair pathways.

Vladimir Shafirovich1, Nicholas E Geacintov2.   

Abstract

It is generally believed that the mammalian nucleotide excision repair pathway removes DNA helix-distorting bulky DNA lesions, while small non-bulky lesions are repaired by base excision repair (BER). However, recent work demonstrates that the oxidativly generated guanine oxidation products, spiroimininodihydantoin (Sp), 5-guanidinohydantoin (Gh), and certain intrastrand cross-linked lesions, are good substrates of NER and BER pathways that compete with one another in human cell extracts. The oxidation of guanine by peroxynitrite is known to generate 5-guanidino-4-nitroimidazole (NIm) which is structurally similar to Gh, except that the 4-nitro group in NIm is replaced by a keto group in Gh. However, unlike Gh, NIm is an excellent substrate of BER, but not of NER. These and other related results are reviewed and discussed in this article.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Base excision repair; DNA damage; Nucleotide excision repair; Oxidative stress; Reactive oxygen species

Mesh:

Substances:

Year:  2016        PMID: 27818219      PMCID: PMC5418118          DOI: 10.1016/j.freeradbiomed.2016.10.507

Source DB:  PubMed          Journal:  Free Radic Biol Med        ISSN: 0891-5849            Impact factor:   7.376


  116 in total

1.  Generation of guanine-thymidine cross-links in DNA by peroxynitrite/carbon dioxide.

Authors:  Byeong Hwa Yun; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  Chem Res Toxicol       Date:  2011-05-04       Impact factor: 3.739

2.  Repair of oxidized bases in DNA bubble structures by human DNA glycosylases NEIL1 and NEIL2.

Authors:  Hong Dou; Sankar Mitra; Tapas K Hazra
Journal:  J Biol Chem       Date:  2003-09-30       Impact factor: 5.157

3.  Efficient synthesis of DNA containing the guanine oxidation-nitration product 5-guanidino-4-nitroimidazole: generation by a postsynthetic substitution reaction.

Authors:  William L Neeley; Paul T Henderson; John M Essigmann
Journal:  Org Lett       Date:  2004-01-22       Impact factor: 6.005

Review 4.  Base-excision repair of oxidative DNA damage.

Authors:  Sheila S David; Valerie L O'Shea; Sucharita Kundu
Journal:  Nature       Date:  2007-06-21       Impact factor: 49.962

Review 5.  Molecular mechanisms of mammalian global genome nucleotide excision repair.

Authors:  Ludovic C J Gillet; Orlando D Schärer
Journal:  Chem Rev       Date:  2006-02       Impact factor: 60.622

Review 6.  Repair of oxidative DNA damage and cancer: recent progress in DNA base excision repair.

Authors:  Timothy L Scott; Suganya Rangaswamy; Christina A Wicker; Tadahide Izumi
Journal:  Antioxid Redox Signal       Date:  2013-10-15       Impact factor: 8.401

7.  Reconciliation of chemical, enzymatic, spectroscopic and computational data to assign the absolute configuration of the DNA base lesion spiroiminodihydantoin.

Authors:  Aaron M Fleming; Anita M Orendt; Yanan He; Judy Zhu; Rina K Dukor; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2013-11-21       Impact factor: 15.419

Review 8.  Human DNA glycosylases involved in the repair of oxidatively damaged DNA.

Authors:  Hiroshi Ide; Mitsuharu Kotera
Journal:  Biol Pharm Bull       Date:  2004-04       Impact factor: 2.233

9.  The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions.

Authors:  Konstantin Kropachev; Marina Kolbanovskii; Yuqin Cai; Fabian Rodríguez; Alexander Kolbanovskii; Yang Liu; Lu Zhang; Shantu Amin; Dinshaw Patel; Suse Broyde; Nicholas E Geacintov
Journal:  J Mol Biol       Date:  2009-01-08       Impact factor: 5.469

10.  A back-up glycosylase in Nth1 knock-out mice is a functional Nei (endonuclease VIII) homologue.

Authors:  Masashi Takao; Shin-Ichiro Kanno; Kumiko Kobayashi; Qiu-Mei Zhang; Shuji Yonei; Gijbertus T J van der Horst; Akira Yasui
Journal:  J Biol Chem       Date:  2002-08-27       Impact factor: 5.157

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  22 in total

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Authors:  Douglas M Banda; Nicole N Nuñez; Michael A Burnside; Katie M Bradshaw; Sheila S David
Journal:  Free Radic Biol Med       Date:  2017-01-10       Impact factor: 7.376

2.  G-quadruplex-forming promoter sequences enable transcriptional activation in response to oxidative stress.

Authors:  Bogdan I Fedeles
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

Review 3.  Oxidative Stress in Cancer.

Authors:  John D Hayes; Albena T Dinkova-Kostova; Kenneth D Tew
Journal:  Cancer Cell       Date:  2020-07-09       Impact factor: 31.743

4.  Synthesis of Oligonucleotides Containing the N6 -(2-Deoxy-α,β-d-erythropentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine (Fapy⋅dG) Oxidative Damage Product Derived from 2'-Deoxyguanosine.

Authors:  Haozhe Yang; Joel A Tang; Marc M Greenberg
Journal:  Chemistry       Date:  2020-04-09       Impact factor: 5.236

5.  Interplay of Guanine Oxidation and G-Quadruplex Folding in Gene Promoters.

Authors:  Aaron M Fleming; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2020-01-09       Impact factor: 15.419

6.  Oxidative DNA damage & repair: An introduction.

Authors:  Jean Cadet; Kelvin J A Davies
Journal:  Free Radic Biol Med       Date:  2017-03-28       Impact factor: 7.376

Review 7.  Redox-sensitive signaling in inflammatory T cells and in autoimmune disease.

Authors:  Cornelia M Weyand; Yi Shen; Jorg J Goronzy
Journal:  Free Radic Biol Med       Date:  2018-03-07       Impact factor: 7.376

8.  [Role of poly(ADP-ribose) polymerases-1-mediated blockade of autophagy in ischemia/reperfusion injury of rat cardiomyocytes].

Authors:  Wei Zhao; Yongwei Wang; Guanshan Wei; Shiyuan Xu
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2018-07-30

9.  Recognition and repair of oxidatively generated DNA lesions in plasmid DNA by a facilitated diffusion mechanism.

Authors:  Marina Kolbanovskiy; Abraham Aharonoff; Ana Helena Sales; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  Biochem J       Date:  2021-06-25       Impact factor: 3.766

Review 10.  Autophagy Roles in the Modulation of DNA Repair Pathways.

Authors:  Luciana R Gomes; Carlos F M Menck; Giovana S Leandro
Journal:  Int J Mol Sci       Date:  2017-11-07       Impact factor: 5.923

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